Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01476 ATGGAGGAAGCAATGGCAGCAAGATATTGGTGTCATATGTGCTCTCAAATGGTGAATCCCATCATGGAAGTGGAGATCAAATGCCCATTTTGTCATAGTGGTTTTGTTGAAGAAATGAGTAACACTACCATTAGCAGTGCCTTTCAAAATACACCAGAAGCTGATTTTGGATCCGAACGGGCTCTCTCCCTTTGGGCACCAATCTTGCTAGGCATGATGGGTAATCCACATCATCGTCGAAGACTCAGACGAATTGAGCTTGATGATGATGACAGTGATGATAATGTTAATCGTGATGATGTTGACAGTGCAGCACGTCATGGTGGAGACAATGAATATGATCAAGACATTGAGTCCATCATTAGGAGGAGAAGGAGAAGCTCAGCTACCATTCAACAATTGCTCCAAGGCATAAGAGCTGGATTGGCATCTGAATCACAGGTGAATACTGACAATGATGAACATTTTAGGGAAAGAGAAAGGGATAGAGATAGAGACAGAGAAAGAGAGCGTGTTATCTTGATTAATCCTTTTAATCAGACTATTATTGTTCAAGGTTCCTTTGATACAAACCGGGATCAAAGTGAAAACCGTGGTCCCATTGGGTCTCTGGGTGACTATTTCATAGGGCCTGGTTTGGATTTGTTGTTGCAACATTTGGCTGAGAATGACCCCAATAGGTATGGAACTCCACCTGCAAAGAAGGAGGCCATTGATGCTCTGCCTACTGTGACAATCAATGAGAATTTGCAGTGTTCTGTGTGTTTGGAAGATTTTGAAGCTGGTTCTGAAGCTAAAGAGATGCCTTGTAAACATAGGTTTCATTGTAAGTGCATCCTGCCCTGGCTGGAGCTTCATAGTTCTTGTCCAGTATGCAGGTTTCAATTGCCGGTGGATGAATCTAAGCAAGACTCTGATGTGTCAAGGAATAGCAGAAATCAAAGGGAGGATGAAAATAATGGACATGAAAATGCTGAAGGAGATAGTGAAGAGAGGAATGCAAGCGAGGGTAGAAGATTCTCATTTCCATGGCCTTTCAGTGGATTGTTTTCTTCATTAAACTCTTCATCTTCCTCATCCTCCAGCCCTAATGCAAACGGGAATGGTTCTCAATCAGAAGACAGCTGA 1128 0.4264 MEEAMAARYWCHMCSQMVNPIMEVEIKCPFCHSGFVEEMSNTTISSAFQNTPEADFGSERALSLWAPILLGMMGNPHHRRRLRRIELDDDDSDDNVNRDDVDSAARHGGDNEYDQDIESIIRRRRRSSATIQQLLQGIRAGLASESQVNTDNDEHFRERERDRDRDRERERVILINPFNQTIIVQGSFDTNRDQSENRGPIGSLGDYFIGPGLDLLLQHLAENDPNRYGTPPAKKEAIDALPTVTINENLQCSVCLEDFEAGSEAKEMPCKHRFHCKCILPWLELHSSCPVCRFQLPVDESKQDSDVSRNSRNQREDENNGHENAEGDSEERNASEGRRFSFPWPFSGLFSSLNSSSSSSSSPNANGNGSQSEDS. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01476 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 299 IPR013083 -
Seca6g01476 375 ProSiteProfiles Zinc finger RING-type profile. 252 293 IPR001841 -
Seca6g01476 375 MobiDBLite consensus disorder prediction 300 339 - -
Seca6g01476 375 SUPERFAMILY RING/U-box 240 302 - -
Seca6g01476 375 MobiDBLite consensus disorder prediction 145 168 - -
Seca6g01476 375 Pfam Ring finger domain 251 293 IPR001841 -
Seca6g01476 375 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Seca6g01476 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 149 297 - -
Seca6g01476 375 MobiDBLite consensus disorder prediction 89 117 - -
Seca6g01476 375 MobiDBLite consensus disorder prediction 98 117 - -
Seca6g01476 375 FunFam E3 ubiquitin-protein ligase RING1-like 219 299 - -
Seca6g01476 375 SMART ring_2 252 292 IPR001841 -
Seca6g01476 375 MobiDBLite consensus disorder prediction 352 375 - -
Seca6g01476 375 MobiDBLite consensus disorder prediction 150 168 - -
Seca6g01476 375 MobiDBLite consensus disorder prediction 300 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01476 Seca-Chr6 64627117 64629929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01476 162 299 C3H Transcription Factor Family AT1G26800 42.143 1.37e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01476 - K11982 gmx:100784876 476.092