Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01460 ATGAGGAACCCGACATGCTCAACGGCAGCGAAAGTAACAAACAAGAAGAAGAGTACTGGTAACAGTAACGCCAATGGTAATGGAAGCAGCACTATGACTAGTACCACTACTACTACTCCATGCTGCAGCAAGGTTGGATTGAAGAGAGGGCCATGGACACCCGAGGAAGACGAAGTGTTAGCTGATTACATAAGGAAAGAAGGAGAAGGTCGTTGGAGAACTCTCCCCAAAAGAGCCGGCCTCCTCCGCTGTGGCAAAAGCTGCCGCCTCCGTTGGATGAACTATCTCCGCCCTTCCGTCAAACGCGGCCAGATCGCCCCCGACGAAGAAGATCTCATCCTCCGCCTCCACCGCCTCCTCGGCAACCGGTGGTCTTTGATAGCTGGGAGAATCCCAGGAAGAACAGATAATGAGATAAAGAACTACTGGAACACACATCTCAGCAAGAAGCTTATTAGCCAAGGGATTGATCCAAGAACCCACAAACCTCTCAACCCACCTACATCTTCTACTACTACACCTCCTCCACCAATAATCATCACCAATCATCACCAAATCCCTAATTCTATTACTACCACTACTCATCATCATCATCATCATGGTATCAATATTATTACTTCTGTCAACCAAGAATTTGATCCCAAGAGCACCTCTCAAACAGCAGTTCATGAGAATAGCAATAATAATATGATCGTTGCTTATGAGAATTTTAATATTCAAGAAGCTGCAGGTGATGATGTTTCTGCAATGGATCATCTACTTGGGGCCCAGGATAATTATGATGATGATATGAATATCAATTATTGTGCTGATGATGTGTTTTCTTCCTTCCTCAATTCCTTGATCAATGAGGATGCTTTTGCTTCACAGAGACACGTGGTGCAATCAGAGCAGCCTCCAAATGATAATGATCCTTTGATTTCATCTGCTGCTGCACTACCGCCTGCACCAGGTTATGGCCTTGGTGTTGTGTGGGAATCGCCACTCATGTCTGCTACTTTCAGCCAAAACGACGACCCTAATCCCAACAGGGTTGTTGATCACCATGAATAG 1053 0.4568 MRNPTCSTAAKVTNKKKSTGNSNANGNGSSTMTSTTTTTPCCSKVGLKRGPWTPEEDEVLADYIRKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPPTSSTTTPPPPIIITNHHQIPNSITTTTHHHHHHGINIITSVNQEFDPKSTSQTAVHENSNNNMIVAYENFNIQEAAGDDVSAMDHLLGAQDNYDDDMNINYCADDVFSSFLNSLINEDAFASQRHVVQSEQPPNDNDPLISSAAALPPAPGYGLGVVWESPLMSATFSQNDDPNPNRVVDHHE. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01460 350 Gene3D - 46 102 - -
Seca6g01460 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 96 IPR017930 -
Seca6g01460 350 SMART sant 101 149 IPR001005 -
Seca6g01460 350 SMART sant 48 98 IPR001005 -
Seca6g01460 350 Gene3D - 106 172 - -
Seca6g01460 350 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Seca6g01460 350 Pfam Myb-like DNA-binding domain 106 147 IPR001005 -
Seca6g01460 350 SUPERFAMILY Homeodomain-like 46 143 IPR009057 -
Seca6g01460 350 CDD SANT 51 96 IPR001005 -
Seca6g01460 350 FunFam Myb transcription factor 46 102 - -
Seca6g01460 350 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 39 226 - -
Seca6g01460 350 FunFam transcription repressor MYB5-like 106 172 - -
Seca6g01460 350 CDD SANT 107 147 IPR001005 -
Seca6g01460 350 MobiDBLite consensus disorder prediction 292 311 - -
Seca6g01460 350 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Seca6g01460 350 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Seca6g01460 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 151 IPR017930 -
Seca6g01460 350 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01460 Seca-Chr6 64247043 64248690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01460 35 312 MYB Transcription Factor Family AT3G13540 49.643 2.42e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca6g01460 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01460 K09422 - gmx:100797847 352.058