Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01445 ATGAGGTTTGAATCTGCAGAGGAGATTAAGACACTTTACCAAGAGTATGCGATCAGAAAAGGATTTTCTATTGTAACAAGGAATTCGAGAAAAGGTCCAGATGGAAAGCTTATATACTTTAGCTTGACTTGTTCAAGAGAGGGGTCATACATGTCATCCGTTCCCACCGATGTGAAGTCTGTTCCTTCGACTAAAATGAAGTGTACTGCGCACATCACTGCCAATCTTAAGAAAGATGGACTATGGCACATCAACAAATGTGTGCACGACCATTCTCATGAGTTGAGCCCAGGAAATTCAAGGTTATTCGCAAATAACCGGAAGATGAGTTTGCATGTGAAACGGCTTGTACAGCTTAATGATGAAGCTGGTGTGCGAATCAACAAGAGCTTCCGATCTCTTGTTTATGACACAGGAGGATATGAAAATGTTCCCTTTGTTGAAAGAGATTTACGTAACTTCATGGGGCAAGAAAGACGGTCCCTTTGCAGAGACGGTGATGGGAAGGCGTTGCTAAGTTACTTTGCACGAATGCAACAACAGAATTCCAATTTTTATTATGAAATTGACTTAGATGAAGATTGTCGGTTGAGGCATCTCTTTTGGGCTGATGCAAGGAACCGGGAAACCTATGAGTATTTTGGAGACGTTGTGTCATTAGACATAACTTATCTAACCAATAAATATGACATGCCTTTTGCACCATTTGGTATTGTAACTGATCAATGCAAGGCCATGCAAAAGGCAATTGCCCCCAACCTTCAACAATTTGTGAAACAATATGAGAATGCCTTGCATCACAAGGCGGGAAAGGAGTATGAGGCTGATTTCCGCTCATTTAATAGCATTCTCCCTTGTGGGTCCAATTCCCCAATCGAGAGACAATTCCAGGAGGAGTACACACATGCAAAGTTTAAAGAGGTTCAGACAGAATTTAGAGCAAAGATGAATTGCACAGCTGTTTGTGAATCAGTGAATGGGTCTATTTGTTTGTATAGGGTCATAGAAGACCTGTATGTGGGGGATAATCCAAGAGAGGCCAAGTATGATGTTTTATTCAATCAGATGGATGTTAGGGCCAACTGCAACTGTCTCCTATTTGAGTTTAAAGGCATCATTTGTAGGCATGCACTTAGTGTTCTAGCTCAAGAGAGAGTCAAGGAAGTGCCAAGTGTATACATATTACCAAGATGGAGCAAAAAAGTGCGAAGAAAGCACACTTACATTAAGTGCAGCTATGATGCCAAACAGCATGCGCCTACAATGTGTCGGTTTGATGATTTATGCAAACAGTTCTATGTTGTGGCTGAGATTGCAACTGAAACCCCAGAAGCCACAAAGCTTTTGGCACAAACAGTGCAGGATGTGAAAGACAAAGTAAAGGCAGCTGCAGGTAGTAAACATCATGACGACAAAATAGATAATGTGCACGATGTTGAAAAAGATAAAGGAACACAGTCTGATGGCAGACCTCCACTAGCAGATCAGATAATTAGAAGTCCGTTAGCGGTCAAGCGTAAGGGGAGGCCACCAATAAACCGAAAAATGTCAACTACTGATAGAATTATAAAGAAAAGGAAGGGCTGCACCAAACGACAACAACAATTTGTGAACATCCATGTGAGAGAATACTCTTCAGATAGGACTATGTGTTTTTTCAATAATTTAGTAACCATTGCATTAATTGTTAATATTTGCCAAACTTCGGAAAAGATTTGA 1719 0.4072 MRFESAEEIKTLYQEYAIRKGFSIVTRNSRKGPDGKLIYFSLTCSREGSYMSSVPTDVKSVPSTKMKCTAHITANLKKDGLWHINKCVHDHSHELSPGNSRLFANNRKMSLHVKRLVQLNDEAGVRINKSFRSLVYDTGGYENVPFVERDLRNFMGQERRSLCRDGDGKALLSYFARMQQQNSNFYYEIDLDEDCRLRHLFWADARNRETYEYFGDVVSLDITYLTNKYDMPFAPFGIVTDQCKAMQKAIAPNLQQFVKQYENALHHKAGKEYEADFRSFNSILPCGSNSPIERQFQEEYTHAKFKEVQTEFRAKMNCTAVCESVNGSICLYRVIEDLYVGDNPREAKYDVLFNQMDVRANCNCLLFEFKGIICRHALSVLAQERVKEVPSVYILPRWSKKVRRKHTYIKCSYDAKQHAPTMCRFDDLCKQFYVVAEIATETPEATKLLAQTVQDVKDKVKAAAGSKHHDDKIDNVHDVEKDKGTQSDGRPPLADQIIRSPLAVKRKGRPPINRKMSTTDRIIKKRKGCTKRQQQFVNIHVREYSSDRTMCFFNNLVTIALIVNICQTSEKI. 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01445 572 MobiDBLite consensus disorder prediction 463 488 - -
Seca6g01445 572 MobiDBLite consensus disorder prediction 463 493 - -
Seca6g01445 572 ProSiteProfiles Zinc finger SWIM-type profile. 349 385 IPR007527 GO:0008270
Seca6g01445 572 Pfam FAR1 DNA-binding domain 12 96 IPR004330 -
Seca6g01445 572 PANTHER OS01G0519700 PROTEIN 1 238 - -
Seca6g01445 572 Pfam SWIM zinc finger 358 381 IPR007527 GO:0008270
Seca6g01445 572 SMART 26again6 360 387 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01445 Seca-Chr6 63847102 63849276 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g01445 FAR1 2.7e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01445 - - psat:127136936 476.092