Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01440 ATGGGAGAAATACAAAGAGAGCCAATGTCAACATGGGATAAGGAAGAAGAGGAGGAGGCACATGCACAAGTGGATATCTGGAGATTCATATGTGGATTTGTGGAAATGGCAGTGATGAAATGTGCCATTCAACTTGGTATAGCTGAAGCCATTGAAAGTCATGGAAGCCCCATGACACTATCAGAGCTATCATCAACACTTGGATGTGATCTTTCATATCTTTACCGCATCATGAGGTTCTTAGTGAACCGAAGGGTCTTCAAAACCATACCCATTAAACATGACTCTCTAGGCTATGCTCAAACACCATTGTCTCGTTGTTTGATGAGAAATGGTGAACATAGCATGGCTTCTTTAATTTTGTTGGAGAGTAGTCCCATAATGCTAGCACCTTGGCATAGTCTAAGTGCTCGTGTTTTGGTTAATGGTAACTCCTCGTTTGAAAAGGTTCATGGTGAAGATGTGTGGAAGTTTGCTGCGGAAAATCTTGATCATAGCAACCTCATTAATGAAGCTATGGCATGTGATGCTAAGTTTGTTGTGCCTGCTATTATTGAAGGCTGTAGTGAAGCATTTGATGGTGTTAACACCTTGGTGGATGTGGGTGGAGGGAATGGCACCACCTCTCGCATCCTTGCTAAGGTTTTCCCTTGGATTCAATTGATCAATTTTGATCTTCCTCATGTCATTGATGCAGCCCCAAAGTGCAATGGAGTAGAACATATAGCTGGTGACATGTTTCAAAGTGTTCCCAAAGCTGATGCTGCATTTATTAAGTGGGTTTTGCATGATTGGAGTGATGAAGAGTGCATCCAAATCTTAAAGAAGTGCAGAGAAGCTATTCCAAAGGGAAATGGAAAGGTTATTATTGTGGAAGCGGTGATTGAGAAAGGAGGAGGAAAACATGACAAGTTAAACGATATAGGATTACTACTAGACATGGTGATGATGGCACACACTAATTTAGGCAAAGAAAGGACACTGAAAGAGTGGGACTATGTGATTAAAATGGCTGGATTTAGTGCATACACCGTGAAAGCTATTAATGCTGTGCAGTCTGTAATTTTGGCTTTCTCTTGA 1080 0.413 MGEIQREPMSTWDKEEEEEAHAQVDIWRFICGFVEMAVMKCAIQLGIAEAIESHGSPMTLSELSSTLGCDLSYLYRIMRFLVNRRVFKTIPIKHDSLGYAQTPLSRCLMRNGEHSMASLILLESSPIMLAPWHSLSARVLVNGNSSFEKVHGEDVWKFAAENLDHSNLINEAMACDAKFVVPAIIEGCSEAFDGVNTLVDVGGGNGTTSRILAKVFPWIQLINFDLPHVIDAAPKCNGVEHIAGDMFQSVPKADAAFIKWVLHDWSDEECIQILKKCREAIPKGNGKVIIVEAVIEKGGGKHDKLNDIGLLLDMVMMAHTNLGKERTLKEWDYVIKMAGFSAYTVKAINAVQSVILAFS. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01440 359 CDD AdoMet_MTases 197 291 - -
Seca6g01440 359 Gene3D Vaccinia Virus protein VP39 110 358 IPR029063 -
Seca6g01440 359 PIRSF O-mtase 4 359 IPR016461 GO:0008168
Seca6g01440 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 356 IPR029063 -
Seca6g01440 359 Gene3D - 9 108 IPR036388 -
Seca6g01440 359 Pfam Dimerisation domain 38 82 IPR012967 GO:0046983
Seca6g01440 359 Pfam O-methyltransferase domain 132 341 IPR001077 GO:0008171
Seca6g01440 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 359 IPR016461 GO:0008168
Seca6g01440 359 FunFam O-methyltransferase family protein 10 108 - -
Seca6g01440 359 FunFam O-methyltransferase family protein 110 358 - -
Seca6g01440 359 PANTHER O-METHYLTRANSFERASE 36 342 IPR016461 GO:0008168
Seca6g01440 359 SUPERFAMILY "Winged helix" DNA-binding domain 16 112 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01440 Seca-Chr6 63799587 63802177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01440 3 345 Monolignol Biosynthesis Gene Families AT5G54160 32.955 2.21e-59 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01440 K22588 - gmx:100782951 520.776