LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g01435	ATGCGACCTTCATGGGCTGATTTGGCTGCAAATTCCGCGGCCGAAAATGGACCTTCTTCTGCCAACACTGCAGCTCCTTCACGACCTGTTTATGTTCCTCCGCATCTCAGGAACCGTCCACCACCATCAACAGCAGCAGCAGCAGCAGCAGAATCCCCTGCTCCTCCAGCTTCTTCTGTTTCTGCTTCTGCTTCTGCTTCTAGATCATCATCGCGTTGGGCACCGCCCAGAAACGAGTACCGTGGCCGCACGGGTGGATGGGGGAACCAAGCTGGTGGTTGGGATAATCGTGGTGGCAGGGACCGTGAAGTCAATCCCTTTGGAGATGATGCAGAAGATGCGATTAGTGAGGAGCAGGATAGTAACACGGGGATAAATTTTGATGCATATGAAGACATTCCGGTGGAGACTAGCGGTGAGAATGTACCCCCACCTGTGAACACGTTTGCAGAGATTGACTTGGGGGAAGCACTTAACCAGAACATAAGGCGGTGCAAATATGTGAAGCCTACGCCTGTGCAGCGGCATGCCATACCGATATCCCTTGGCGGAAGGGATTTGATGGCTTGTGCACAGACAGGTTCTGGAAAAACGGCTGCTTTCTGTTTCCCAATTATCAGTGGAATTATGAGGGGCCAACCTGTGCAAAGGCCACCTCGCGGGGTGCGTACTGTGTATCCACTTGCCCTTGTTCTGTCACCAACTAGGGAGCTGTCAATGCAAATACATGAAGAGGCTAGGAAGTTTTCATACCAGACTGGGGTTAGAGTGGTTGTTGCTTATGGTGGAGCTCCAATAAACCAGCAGCTACGGGATCTTGAGAGAGGGGTGGACATTCTTGTTGCAACTCCAGGAAGACTGGTAGATTTGTTGGAGAGAGCTAGAGTTTCACTGCAGATGATCAGATATCTGGCCTTAGATGAGGCAGACAGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGTCAGACAGACTATGTTGTTCAGTGCCACGTTCCCTAAAGAGATACAGAGACTAGCCTCTGATTTCCTTGCAAATTATATTTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTGTCCAAAGAGTTGAATATGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCACAGAGGGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTGGAACATTGGTTATGTCGTAATGGTTTTCCAGCAACTACTATTCATGGTGACAGGTCACAACAGGAAAGAGAATCAGCATTAAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTAGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGTATTGGAAGGACGGGGCGAGCAGGGAAGAAGGGCCTTGCAACTGCATTCTTTAATGACAACAATGCATCACTAGCAAGGTCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCGCGGTATGCTGCTCGATCTTCCTTTGGTGGAAGGAACCGTCGATCAGGAGGCCGATTTGGTGGTCGTGACTTCCGAAGAGAAAATTCTTTTAATAGGGGTGGTTCTGATTATTACGGTGCTGGAAACAATAGTGGCGGCGGGTATGGGGCTTCTGCTGGGTATGCTGGAGGAGGATACGGTCCTGGGGTAACCAGTGCATGGGACTGA	1821	0.4849	MRPSWADLAANSAAENGPSSANTAAPSRPVYVPPHLRNRPPPSTAAAAAAESPAPPASSVSASASASRSSSRWAPPRNEYRGRTGGWGNQAGGWDNRGGRDREVNPFGDDAEDAISEEQDSNTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCRNGFPATTIHGDRSQQERESALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARSLADLMQEANQEVPAWLSRYAARSSFGGRNRRSGGRFGGRDFRRENSFNRGGSDYYGAGNNSGGGYGASAGYAGGGYGPGVTSAWD.	607

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g01435	606	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	178	363	IPR014001	-
	Seca6g01435	606	MobiDBLite	consensus disorder prediction	56	74	-	-
	Seca6g01435	606	FunFam	ATP-dependent RNA helicase RhlB	366	545	-	-
	Seca6g01435	606	Pfam	Helicase conserved C-terminal domain	387	502	IPR001650	-
	Seca6g01435	606	Pfam	DEAD/DEAH box helicase	171	352	IPR011545	GO:0003676\|GO:0005524
	Seca6g01435	606	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	228	518	IPR027417	-
	Seca6g01435	606	CDD	SF2_C_DEAD	375	511	-	-
	Seca6g01435	606	Gene3D	-	104	365	IPR027417	-
	Seca6g01435	606	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	115	541	-	-
	Seca6g01435	606	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	374	541	IPR001650	-
	Seca6g01435	606	Gene3D	-	366	545	IPR027417	-
	Seca6g01435	606	SMART	ultradead3	166	378	IPR014001	-
	Seca6g01435	606	MobiDBLite	consensus disorder prediction	1	109	-	-
	Seca6g01435	606	SMART	helicmild6	421	502	IPR001650	-
	Seca6g01435	606	CDD	DEADc_DDX3_DDX4	148	369	IPR044763	GO:0003724\|GO:0005524
	Seca6g01435	606	FunFam	Probable ATP-dependent RNA helicase DDX4	109	365	-	-
	Seca6g01435	606	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	147	175	IPR014014	GO:0003724

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g01435	Seca-Chr6	63586527	63592324	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g01435	145	534	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.225	8.31e-64	214

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g01435	K11594		-	gmx:100795756	965.296