Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01427 ATGTTATTGGATTCGGACTACAGTGTGAAACTTTCTGATTTTCGGTTGGTGAAAGATGCCCCTGTGGGTGAATTGACACATATTTCAACTAGAGTGATGGGTATTCAAGGGTATGCAGCCCCTGAGTATGTGATGACAAGGCACTTGAGTTGGAAGAGTGAAGTTTCTAGTTTTGGGGAGGTATTGCTTGAGATAATGACAGGGAAAAGGGCAACGGATAGGAAGAGGCCTGTAGCGAAGCATAACCTTTTTTAA 255 0.4314 MLLDSDYSVKLSDFRLVKDAPVGELTHISTRVMGIQGYAAPEYVMTRHLSWKSEVSSFGEVLLEIMTGKRATDRKRPVAKHNLF. 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01427 84 ProSiteProfiles Protein kinase domain profile. 1 84 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01427 84 Pfam Protein tyrosine and serine/threonine kinase 2 71 IPR001245 GO:0004672|GO:0006468
Seca6g01427 84 SUPERFAMILY Protein kinase-like (PK-like) 2 77 IPR011009 -
Seca6g01427 84 Gene3D Transferase(Phosphotransferase) domain 1 1 83 - -
Seca6g01427 84 PANTHER OS01G0588500 PROTEIN-RELATED 2 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01427 Seca-Chr6 63217434 63217772 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01427 1 83 Glycoside Hydrolase AT3G07070 54.217 5.05e-25 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca6g01427 PK_Tyr_Ser-Thr 6.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01427 - - egu:105047713 118.242