Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01405 ATGGAGACTAGTCCCATAATGCTAGCATATTGGCATAGTGTAAGTGCTCGTGTTTTGGTTAATGGTAACTCCTCGTTTGAAAAGGTTTATGGTGAAGATCATTGGAAGTATGTTGCGGAAAATCTTGATCATAGCAACCTCTTCAATGAAGCTATGGCATGTGATACTAAGTTTGTGGTGCCTGCTATTATTGAAGGCTGTAGTGAAGCATTTAATGGTGTTAGAACCATTGTGGATGTGGGTGGAGGGAATGGCACCACCTCTCGCATCCTTGCTAAGGCTTTCCCTTGGATTCAATTGATCAATTTTGATCTTCCTCATGTTATTGTTGCAGCCCCAAAGTGCAATGGGGTGGAATATGTAGCAGGTGACATGTTTCAAAGTGTCCCCAAAGCTGATGTTGCATTTCTTAAGTTACAAAAATTGGGAGAAATACAAAGAGAGGCAATTATGTCAGCGTGGGAGAAGGAAGAAGAAGCAGAAGAGGCACATGCACAAGTTGATATCTGGAACATCATATGTGGATTTGCGGAAATGGCAGTGACGAGATGTTCCATTGAGCTTGGCATAGCTGAAGCCATTGAAAAGCACGGAAGCCCCATGACACTATTGGATCTATCGTCAACCCTTGGATGTGATCCTTCATATCTTAACCGCATCATGAGGTTCTTAGTGAACCGAAAGATCTTCAAAACCATACCCATCAAACATGACTCTCTAGGCTATGCTCACACACCACTGTCTCGTTGTTTGATGAGAAATGGTGAACATAGCATGACTTCTTTATTTTTGATGGAGACTAGTCCCATAATGCTAGCACCTTGGCATTGTCTAAGTGCTCGTGTTTTGGTTAATGGCAATCCCTCATTTGAAAAGGTTTATGGTGAAGATATATGGCAGTATGCTGCGGAAAATCTTGATCATAGCAACCTCTTCAATGAAGCTATGGCATGTGATACTAAGTTTGTTGTGCCTGCTATTATTGAAGGTTGTAGTGAAGCATTTGATGGTGTTAGCACCTTGGTGGATGTTGGTGGAGGAAATGGCACCACCTCTCGCATCCTAGCAAAGGCTTGCCCTTGGATTCAATTGATCAATTTTGATCTTCCTCATGTTATTGTTGCAGCCCCAAAGTGCAATGGGGTGGAATATGTAGCAGGTGACATGTTTCAAAGTGTCCCCAAAGCTGATGCTGCATTTCTTAAGTGGATTTTGCATGACTGGAGTGATGAAGAGTGCATCCAAATCTTAAAGAAGTGTAGAGAAGCTATTCCAATGGAAAATGGAAGGGTTATTATTGTGGAAGCGGTGATTGAAGAAGGAGGAGGAAAACATGACAAGTTAAACGATACAGGATTACTGCTGGACATGGTGATGATGGTACACACTTCAGGAAAAGAAAGGACACTGAAAGAGTGGGACTATGTGATTAAAGTGGCTGGATTTAGTGCTTACACCGTGAAAGCTATCAATGCAATGCAGTCTGTAATTCTGGCTTTCTGTTGA 1506 0.421 METSPIMLAYWHSVSARVLVNGNSSFEKVYGEDHWKYVAENLDHSNLFNEAMACDTKFVVPAIIEGCSEAFNGVRTIVDVGGGNGTTSRILAKAFPWIQLINFDLPHVIVAAPKCNGVEYVAGDMFQSVPKADVAFLKLQKLGEIQREAIMSAWEKEEEAEEAHAQVDIWNIICGFAEMAVTRCSIELGIAEAIEKHGSPMTLLDLSSTLGCDPSYLNRIMRFLVNRKIFKTIPIKHDSLGYAHTPLSRCLMRNGEHSMTSLFLMETSPIMLAPWHCLSARVLVNGNPSFEKVYGEDIWQYAAENLDHSNLFNEAMACDTKFVVPAIIEGCSEAFDGVSTLVDVGGGNGTTSRILAKACPWIQLINFDLPHVIVAAPKCNGVEYVAGDMFQSVPKADAAFLKWILHDWSDEECIQILKKCREAIPMENGRVIIVEAVIEEGGGKHDKLNDTGLLLDMVMMVHTSGKERTLKEWDYVIKVAGFSAYTVKAINAMQSVILAFC. 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01405 501 Gene3D Vaccinia Virus protein VP39 1 159 IPR029063 -
Seca6g01405 501 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 256 498 IPR029063 -
Seca6g01405 501 FunFam O-methyltransferase family protein 153 251 - -
Seca6g01405 501 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 138 IPR016461 GO:0008168
Seca6g01405 501 FunFam O-methyltransferase family protein 253 500 - -
Seca6g01405 501 Gene3D - 160 251 IPR036388 -
Seca6g01405 501 Pfam Dimerisation domain 183 225 IPR012967 GO:0046983
Seca6g01405 501 Gene3D Vaccinia Virus protein VP39 253 500 IPR029063 -
Seca6g01405 501 PANTHER O-METHYLTRANSFERASE 179 482 IPR016461 GO:0008168
Seca6g01405 501 Pfam O-methyltransferase domain 275 483 IPR001077 GO:0008171
Seca6g01405 501 Pfam O-methyltransferase domain 11 138 IPR001077 GO:0008171
Seca6g01405 501 CDD AdoMet_MTases 340 434 - -
Seca6g01405 501 SUPERFAMILY "Winged helix" DNA-binding domain 159 255 IPR036390 -
Seca6g01405 501 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 138 IPR029063 -
Seca6g01405 501 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 170 501 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01405 Seca-Chr6 62356057 62362881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01405 183 487 Monolignol Biosynthesis Gene Families AT5G54160 35.873 1.80e-58 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01405 K22588 - gmx:100782951 497.664