Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01396 ATGCATTGCTATGGATATGGATTAACAACTGTAACAATCCCATTCCCACCAATGGTAAGTGATTGTCGTTTTTGCTTCTGTCTCCACGCCGCAAATCCCATACCTTTTTCCGGTAACAGATCCGAACCCGTAAAACTTCTGACCCGAAACCGTGCGGGTTCACTCAGGGTGAGAGCTTCGGTTAGTGATGACGTTTTTGTAACTTCCCGGTCCCAATTGAGCTTCTACGAGCTTCTGGGTGTACCCGAATCCGGGTCATCGGTGGAGGTGAAACACGCGTACAAGCAGTTGGCCCGGAAGTACCACCCGGATGTGTCGCCACCGGGTCGGGTCGAGGAGTACACGAAGAGGTTTATTATGGTGCAGGAGGCCTACGAGACTTTGTCTGATCCAGCAAGGAGAGCTATGTATGATAGAGACATGGCTAATGGTAATGGGATTCACTTTGCCTTCTCCTCTTGCAGACGCTATAACTACCGTAGTGTTGATGATCAGGTGATTGAACAAAAAAATGAATGGAAAACTCAATGGCAATCTCAACTGTGGGAGCTGAAGAGAAGAAGTAAGTGTAAGGAAGGGAATATGTCTTGGGCAGCTCGAATGCGTCAGCAGATGGATGGATTAGCAAATAAATTATGA 639 0.4742 MHCYGYGLTTVTIPFPPMVSDCRFCFCLHAANPIPFSGNRSEPVKLLTRNRAGSLRVRASVSDDVFVTSRSQLSFYELLGVPESGSSVEVKHAYKQLARKYHPDVSPPGRVEEYTKRFIMVQEAYETLSDPARRAMYDRDMANGNGIHFAFSSCRRYNYRSVDDQVIEQKNEWKTQWQSQLWELKRRSKCKEGNMSWAARMRQQMDGLANKL. 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01396 212 FunFam Chaperone protein dnaJ 20, chloroplastic 60 175 - -
Seca6g01396 212 SUPERFAMILY Chaperone J-domain 71 152 IPR036869 -
Seca6g01396 212 Gene3D DnaJ domain 63 153 IPR036869 -
Seca6g01396 212 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 56 205 - -
Seca6g01396 212 SMART dnaj_3 73 133 IPR001623 -
Seca6g01396 212 CDD DnaJ 75 130 IPR001623 -
Seca6g01396 212 ProSitePatterns Nt-dnaJ domain signature. 118 137 IPR018253 -
Seca6g01396 212 ProSiteProfiles dnaJ domain profile. 74 141 IPR001623 -
Seca6g01396 212 Pfam DnaJ domain 75 138 IPR001623 -
Seca6g01396 212 PRINTS DnaJ domain signature 76 94 IPR001623 -
Seca6g01396 212 PRINTS DnaJ domain signature 113 133 IPR001623 -
Seca6g01396 212 PRINTS DnaJ domain signature 94 109 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01396 Seca-Chr6 62118051 62122181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01396 76 138 C2H2 Transcription Factor Family AT1G74250 42.424 1.55e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01396 - - gmx:100101903 213.386