Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01391 ATGAGAATGTTGCCTGTTTGCTCAGCCACTCCGTGCTATTCCTCGTCTTCTCAGATTCCCTTATTTGGGGGGTTGCTACCCCTGTGCCCAGTTCGAAAGGATCTTGATAGCAGGTGTGTGGCAGAAGAAGGTGTGCATCTGGGTTTGCAATATGGAACACACACAACAAGAAATTCATTTACAGCACAAGCTACAAAGACTGTCTCGGGTAGTTTTTCCCTTTCAAGTGAACCAGGATACCTTACAAACACATGGGGTCATTCATTGAGTAATGGAGAACTCAGACACATAGAAAGATACAATTTGTCTACTGTGCCAGAGGAACTTGTAGACATTGCAAAAGAGTCAACTGAAGGATCTAATACATTAGTAGCACCAGCACAACCAGAAATATTATCTTGTACTGATATAACGCCAGAGAAGTTTGAATCAGTATCCAGTTCAATTGATGTGGATAATGAATCTTTAGCCAGTGCAAAAGCAAGTGTTGGTGACCTTTTTGCTGGAATCAATGAGTCATTCAATGACTCAATTAGTAAGGGAGAAAATGCTTTACGAAGCTCACTGGATACAGCCACTTCTTTTATAGATTCTATTGTTGAAAATGCTAATAAATCTGCAGATAATGCATTTAGTAAGGCATTTTCTGCTGTTGATCAAACGGGGGAAACAGCAAATAAGAAATTAACTAGCTTTTCAAGTGAGCTAAGTGGAGTCGCAAATAAAGCACCTGCTTTGGCCATTGATGTGTTGCGCCGCACAATCATAGCAGTAGAGAGTTCTCTAGCAAGTGGAGCTTCCTATGTTGTCTACCTCTATGGCTCAGCCAAGGAGCTCCTTCCTGCAGAGATCAGGGATACAGTCAATGTATATGAAGATAAAGCAACAGAAATCTTGAGGCCTGTTGGGCCTGCAACTCAAAAGATATACATGACTTTCTATTCATTGGAGAAGAGTCTTGGATTGGATCCAAATGACCCAATTATTCCATTTCTTGTTTTTGTGGGCTCTTCAGCAACATTATGGGCTGTTTATTGGTTGTGGACATATGGTGGTTATTCAGGAGATTTATCCCCTAAATCAGCTTTGGAGCTTTTGACTGGGGACAAAAATGCTGTACTTATAGATGTCCGCACTGAGGATTTGCGAGAAAAAGATGGTATTCCTGATCTTCGACGGGCTGCTCGGTTTCGCTATGCAAGTGTAACTCCACTTGAGGTTGATGGCTCTACACGTAAGTTGTTGAAGAGTGGTAGAGACCTGGATGACTCTTTGACTGCTGCTATTATTCGAAATTTGAAGATTGTTAAGGACAGTTCCAAGGTTATAGTGTTGGATGCGGATGGTACTCGTTCTAAAGGCATTGCGAGATCCTTGAGGAATATTGGGGTCAAGAATCCATACTTGGTTCAAGGTGGCTTTCAGTCATGGATGAAAGAAAGCCTCCGCGTCAAGGAACTCAAACCTGAGACAGCACTTTCCATACTCAATGAGGAAGCTGAAGCAATTCTAGAGGATGTTAATCCTTCCCCTTTGCAACTTTTAGGTTATGGTACGGTACTTATTGCGGGGTTCTATGCATTGTTAGGTGCGTACATGTTCTTTCATAAACTATCAATATGA 1623 0.4177 MRMLPVCSATPCYSSSSQIPLFGGLLPLCPVRKDLDSRCVAEEGVHLGLQYGTHTTRNSFTAQATKTVSGSFSLSSEPGYLTNTWGHSLSNGELRHIERYNLSTVPEELVDIAKESTEGSNTLVAPAQPEILSCTDITPEKFESVSSSIDVDNESLASAKASVGDLFAGINESFNDSISKGENALRSSLDTATSFIDSIVENANKSADNAFSKAFSAVDQTGETANKKLTSFSSELSGVANKAPALAIDVLRRTIIAVESSLASGASYVVYLYGSAKELLPAEIRDTVNVYEDKATEILRPVGPATQKIYMTFYSLEKSLGLDPNDPIIPFLVFVGSSATLWAVYWLWTYGGYSGDLSPKSALELLTGDKNAVLIDVRTEDLREKDGIPDLRRAARFRYASVTPLEVDGSTRKLLKSGRDLDDSLTAAIIRNLKIVKDSSKVIVLDADGTRSKGIARSLRNIGVKNPYLVQGGFQSWMKESLRVKELKPETALSILNEEAEAILEDVNPSPLQLLGYGTVLIAGFYALLGAYMFFHKLSI. 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01391 540 SMART rhod_4 358 483 IPR001763 -
Seca6g01391 540 Pfam Rhodanese-like domain 359 479 IPR001763 -
Seca6g01391 540 CDD RHOD 363 477 - -
Seca6g01391 540 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 341 484 IPR036873 -
Seca6g01391 540 Gene3D - 353 507 IPR036873 -
Seca6g01391 540 ProSiteProfiles Rhodanese domain profile. 368 486 IPR001763 -
Seca6g01391 540 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 3 529 IPR044690 GO:0009704|GO:0071277|GO:0090333
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01391 Seca-Chr6 61991629 62001122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01391 330 447 Sulfurtransferasese or Rhodanese AT5G23060 29.365 1.64e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01391 - - lja:Lj0g3v0313259.2 841.647