Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01388 ATGGCATTCTGTAGTAAGGTTGGAAACCTCTTGAGGCAGAGTGCTCCTCAGAGCAGACAAGTACCTGTTGCATCCATGCTTAATTACATTCGCTGCATGTCTTCATCCAAGCTTTTCATCGGAGGCCTTTCATATGGAGTTGATGACCAGTCTCTTAGGGATGCGTTTGCAAGCTTTGGAGATGTGGTTGAGGCAAGGGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCACTGATGAGTCAGCAAGTTCAGCACTATCTGCCATGGATGGACAGGATCTCAATGGGCGAAACATTCGGGTGTCCTATGCAAATGATAGACCTTCTGGACCTCGATCTCCTGGTGGTGGTTATGGTGGTGGTTATGGTGGTGATTCTCGTAGGGGTGGTTGGTGA 420 0.4762 MAFCSKVGNLLRQSAPQSRQVPVASMLNYIRCMSSSKLFIGGLSYGVDDQSLRDAFASFGDVVEARVITDRDTGRSRGFGFVNFSTDESASSALSAMDGQDLNGRNIRVSYANDRPSGPRSPGGGYGGGYGGDSRRGGW. 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01388 139 Gene3D - 15 139 IPR012677 -
Seca6g01388 139 FunFam Glycine-rich RNA-binding protein 2 25 139 - -
Seca6g01388 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Seca6g01388 139 SUPERFAMILY RNA-binding domain, RBD 31 138 IPR035979 GO:0003676
Seca6g01388 139 SMART rrm1_1 37 110 IPR000504 GO:0003723
Seca6g01388 139 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 10 132 - -
Seca6g01388 139 MobiDBLite consensus disorder prediction 95 139 - -
Seca6g01388 139 CDD RRM2_NsCP33_like 37 112 - -
Seca6g01388 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01388 Seca-Chr6 61943061 61945179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01388 35 117 Eukaryotic Initiation Factors Gene Family AT1G49760 43.373 6.67e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01388 - - gmx:100499841 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01388 6 61943061 61945179 Seca6g01388 6 61943061 61945179 ECH