Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01382 ATGGAAGGGTCTGGATCAGGTGGCGGCGCGGCACCGTTTCTACTGAAAACGTACGAGATGGTGGAGGATTCATCAACCGACGAGATCGTATCATGGAGTGCTGAAACCAACAACAGTTTCATCGTTTGGAGCCCCGCTGATTTCTCTCGTCTTCTTCTTCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAGCTTAATACCTATGGATTTCGAAAAATACATTCTGAGCGATGGGAATTTGCTAATGAAGATTTTGTGAAAGGTCAAAAGCACCTTCTTAAGAATATTCACCGCAAGAAACCTATTCACAGTCACAGTCATCCTCCTCCAGGCTCTCATGTGGATCCAGAGAGGTCAGCATTTGAGGAAGAAATAGAGAAACTTTCACATGAGAAAACCACTATTGAATCCAGTATTTCTGGCTTCAAGCAACACCTGTCAGCTGCAAAGCTTCATGTGGAAGATCTACAGCAGCGTTTAGATGGCATGGAGAAGAGGCAGAAGAATTTGCTGAACTTGTTCGAAAGGGCTCTTCAGAATCCTACTCTTGTTGAACAAATTTCACGCAAAATTGAGTCCATGGATTTGTTGGGATATAACAAGAAAAGGAGATTGCCTCCGGTTGATCACTTGCAGCCTGTTGCTGAGAATAATTTTGTTGAGAATAATAGCAGTTTTGGAATGGAATTTGGAAACGTATTCCATCAAGATTTCTCAAATAAACTCAGGCTGGAATTGTCACCAACAGTTTCAGATATCAACTTGGTATCATGTAGTACACATAGTTCAAATGAAGATGGAGAAAGCCTGCAAATGATGCTATGTGAAGGTGAATCAAAAGAAGTGCAGACAACAACAGCTCTTGGATTTGCACCTGAACCATTAGAGAATGCAGATATTGGAGCATCTTTTACTCTTGAGATGGATTCATATTTATCAAGAAAATCAACAGCTGCTGAGAGCTCAAAACTGCACTCCTTGGAACCAAATAGTGAAGAAAATGATACTCATATATCCTGCCTTTTAAATCTAACTCTGGCATCTTCTCCATTACAAGTGAAGAGAAATTCACACACAGATACATCACCCCAAATAGACTGTCAAGAAATTGGTAAACTGGTAGAATCAAGATTTTATGCCAATGATAAAGAATCCAATGGTGAAGCTTCTTCAAACAGGAATCTGGCTAATGAGGCTACTAATTTAGCTTCCTCACAAGAGGCTCCTAGTAACAACCATGGGACCCCAGCTGCTCCAGTTAGAGTAAATGATGTATTTTGGGAACAGTTCCTTACAGAAAGACCAGCCTATTCAGACAATGAAGAGTCAATATCCAACTACAAAGCAAATGCATATGCCAAGCAAGATGAAGGGCAGTCAGTTCATGGAATCTCTGGAAGCATTATGAATATGGATCAGCTCAAACTTTGA 1443 0.4089 MEGSGSGGGAAPFLLKTYEMVEDSSTDEIVSWSAETNNSFIVWSPADFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIHSERWEFANEDFVKGQKHLLKNIHRKKPIHSHSHPPPGSHVDPERSAFEEEIEKLSHEKTTIESSISGFKQHLSAAKLHVEDLQQRLDGMEKRQKNLLNLFERALQNPTLVEQISRKIESMDLLGYNKKRRLPPVDHLQPVAENNFVENNSSFGMEFGNVFHQDFSNKLRLELSPTVSDINLVSCSTHSSNEDGESLQMMLCEGESKEVQTTTALGFAPEPLENADIGASFTLEMDSYLSRKSTAAESSKLHSLEPNSEENDTHISCLLNLTLASSPLQVKRNSHTDTSPQIDCQEIGKLVESRFYANDKESNGEASSNRNLANEATNLASSQEAPSNNHGTPAAPVRVNDVFWEQFLTERPAYSDNEESISNYKANAYAKQDEGQSVHGISGSIMNMDQLKL. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01382 480 Coils Coil 150 184 - -
Seca6g01382 480 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g01382 480 Pfam HSF-type DNA-binding 13 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g01382 480 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g01382 480 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g01382 480 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g01382 480 Gene3D - 8 104 IPR036388 -
Seca6g01382 480 FunFam Heat shock transcription factor 1 6 104 - -
Seca6g01382 480 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 310 IPR027725 -
Seca6g01382 480 SMART hsfneu3 9 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g01382 480 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01382 Seca-Chr6 61738723 61742308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01382 13 480 HSF AT4G13980 49.684 9.58e-143 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca6g01382 HSF_DNA-bind 4.5e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01382 K09419 - gmx:100786408 665.996