Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01380 ATGAGTTCCAATTCCAAACAAAATAAGCTTCCTATAGAAGAAACAGAAGTTGATGAAACTTACCTCTCTGCTCTGTTTCTAAGCTTTAGCAGGGTCTTTCTTGCAATTCTAAACGCTGCTATTGATCTCAATTTGTTTGACATAATTGCTAAGGCACAAAGTTTAAGTAGTTCATCATTGTCTGCCTCTGAAATTGCTTCTCAATTTCCAAAACAACACTCAGAATTGGCAGGGTCTCTCAGTGATGTTATGTTGCTGTCTATGGAAATTTTGGAACTATTAGTTATGAATGGAAGAGAATTGTGGGTAATGGAAGTGGGGGAGAATGGGGTGGGTGAGTTACAGGGGGTGGGGGAGAAGAGAGAGGGAGAAATGGTGGGGGAAGTTTGTGGCGGTTTTAAGCATGATTTCTAG 414 0.4058 MSSNSKQNKLPIEETEVDETYLSALFLSFSRVFLAILNAAIDLNLFDIIAKAQSLSSSSLSASEIASQFPKQHSELAGSLSDVMLLSMEILELLVMNGRELWVMEVGENGVGELQGVGEKREGEMVGEVCGGFKHDF. 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01380 137 SUPERFAMILY "Winged helix" DNA-binding domain 16 80 IPR036390 -
Seca6g01380 137 Pfam Dimerisation domain 36 80 IPR012967 GO:0046983
Seca6g01380 137 Gene3D - 2 101 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01380 Seca-Chr6 61736021 61736434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01380 1 70 Monolignol Biosynthesis Gene Families AT1G21130 41.429 7.23e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01380 - K13066 aprc:113869089 99.3673