Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01378 ATGCCAGTTCAAAACCAGAAAAACATATTGCAAGACAACTCAGTGACGATAACAATCCTGGGTTTCATAAGCATTGACTGTGGATCAGACGTAGACTACTTGCATGAGGAAACTGGAATCTGGTATCAGACAGATAAAAATTTTGTGGAAACTGGAATGAATCATGTGGTTCCACCAAGAATCAATTTAAACTATGACTACTTTGGGAGACAATTGACCACATTGAGAAGTTTTCCAGATGGAGACAGAAACTGCTACACCTTGAAACCTAAACAGGGCAAAAATAATAGTTATTTAATTAGGGCTTTCTTTGCCTATGGAAATTATGACTTCAAAAATGAAACCCCATCTTTCGACTTGTATATTGGGGTAAATTACTGGGACACCATTGGTTTCATTGATTACTACTACTTTACTGACATTATTCACACCCCCTTAACCGACATCATACATGTTTGTCTTATAAAGACTGGTCCAACAATACCTTTCATTTCTTCATTAGAATTACGACTTTTGAACAGTTCCATTTATCAAATTCCGATCATGTCCAGCAGTACTCCACAACCACAGTTAAAGCTTGAGACAAGGCTTAATTTTGGGGCTCCTTCATATCCTTTACATAACAGGTACAAGGATGATGTATATGATCGGATGTGGCGCTGCTATAAAGAAGTAGATAATAGATCATGGACTCCCCTGTTCTTGGATGAATCAATGGATACTAAGCCTACAACTAAAGTTGGTGCTATTTTGGACATCAAAAGCACCTACCACATCTCCAAGTTAACTTGGCAAGGAGATCCATGTGTTCCAAAACAATATGCATGGGAGGGCCTCAATTGCAGCTCTGACACCAATCCAAGGATCACATCTTTGAACCTGAGCTCAAGCAATCTGGCAGGGGTGATAAGTACTTCATTCTCATATCTTACAGAGCTAGAATTCCTGGATTTGTCAGACAACGAGTTGGAAGGACCTTTGCCTGAATTTCTGGCAAAATTAACAAATTTGAAAACTCTAAATATAGGAGGGAATAAGCTATCAGGATCCATTCCTGCAAAACTAATTGAGAGATCAAGGAATGGGTCACTTACATTAAGGGTTGATGGAAATCCATATCTTTGCACCTCGAGTCCATGCCACAAGAGGAGTAAGATAGTCATTCGGTTGATAGTAATACTTGTTGGAGCTTTCATCCTTTCTGCTGTATTAGTCTTTATTTTCAGAAGACTACAAGTTGCCATTCGTATAAACAAGTCAAGTTCAAACAAAATCAATCGTGGGGACTCAAATAAACAAGAGTTTACCTACTCGGAGGTTTTAAGTATTACCAATAACTTTGAGAGGGTTTTGGGTAAAGGAGGATTTGGAACTGTCTACCATGGTTGCGTAGGTGAAACACAAGTGGCAGTGAAGATGCTCTCTCATTCATCTCAAGGTTTTCAACAATTTCTGACAGAGGCGAAAATTCTCACTATAGTACACCATAAATGCTTGACTCCTCTTATTGGATATTGTAATGAAGGCACGGCACTCATCTATAAATACATGCCCAACGGAAACTTGGCAAAGCATCTTTCAGATAAGAATCAAATTTCGCTTGGTTGGAAACAAAGACTTCAAATTGCTCTGGATTCTGCAGTAGGTTTGGAATATCTACATAATGGCTGTACTCCCCAAATTGTACATAGAGATGTTAAGACTAGCAATATTTTACTTGATGAAGATTTTCGTGGTAAAATATCAGATTTTGGTTATCAAGAATCTTTTCAGATGAATGTGACACTCATGTGTCAACAATAA 1803 0.3816 MPVQNQKNILQDNSVTITILGFISIDCGSDVDYLHEETGIWYQTDKNFVETGMNHVVPPRINLNYDYFGRQLTTLRSFPDGDRNCYTLKPKQGKNNSYLIRAFFAYGNYDFKNETPSFDLYIGVNYWDTIGFIDYYYFTDIIHTPLTDIIHVCLIKTGPTIPFISSLELRLLNSSIYQIPIMSSSTPQPQLKLETRLNFGAPSYPLHNRYKDDVYDRMWRCYKEVDNRSWTPLFLDESMDTKPTTKVGAILDIKSTYHISKLTWQGDPCVPKQYAWEGLNCSSDTNPRITSLNLSSSNLAGVISTSFSYLTELEFLDLSDNELEGPLPEFLAKLTNLKTLNIGGNKLSGSIPAKLIERSRNGSLTLRVDGNPYLCTSSPCHKRSKIVIRLIVILVGAFILSAVLVFIFRRLQVAIRINKSSSNKINRGDSNKQEFTYSEVLSITNNFERVLGKGGFGTVYHGCVGETQVAVKMLSHSSQGFQQFLTEAKILTIVHHKCLTPLIGYCNEGTALIYKYMPNGNLAKHLSDKNQISLGWKQRLQIALDSAVGLEYLHNGCTPQIVHRDVKTSNILLDEDFRGKISDFGYQESFQMNVTLMCQQ. 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01378 600 Pfam Protein tyrosine and serine/threonine kinase 447 590 IPR001245 GO:0004672|GO:0006468
Seca6g01378 600 Gene3D Ribonuclease Inhibitor 246 370 IPR032675 -
Seca6g01378 600 SUPERFAMILY L domain-like 266 357 - -
Seca6g01378 600 PANTHER OS07G0107800 PROTEIN-RELATED 244 587 - -
Seca6g01378 600 Pfam Malectin-like domain 25 242 IPR024788 -
Seca6g01378 600 Pfam Leucine rich repeat 287 347 IPR001611 GO:0005515
Seca6g01378 600 SUPERFAMILY Protein kinase-like (PK-like) 426 594 IPR011009 -
Seca6g01378 600 SMART serkin_6 445 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01378 600 ProSitePatterns Protein kinases ATP-binding region signature. 451 472 IPR017441 GO:0005524
Seca6g01378 600 ProSiteProfiles Protein kinase domain profile. 445 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01378 600 FunFam Leucine-rich repeat receptor-like kinase 245 377 - -
Seca6g01378 600 Gene3D Phosphorylase Kinase; domain 1 427 516 - -
Seca6g01378 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 561 573 IPR008271 GO:0004672|GO:0006468
Seca6g01378 600 FunFam Os07g0541700 protein 517 599 - -
Seca6g01378 600 Gene3D Transferase(Phosphotransferase) domain 1 517 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01378 Seca-Chr6 61625401 61646960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01378 247 593 Receptor kinase-like Gene Family AT2G19210 49.448 1.40e-107 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Seca6g01378 Malectin_like 9.8e-59 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01378 - - gmx:100781084 471.085