Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01358 ATGGTAGAAAGATGCAGGATTGGGTATGAAGAGCATAATAAGTGGTATTTCATTAGCCACAAAGATAAGAAGTATCCAAGAGGGATAAGAACTAATAGAGCTACAATGGTTGGGTTATGGAAGGCAACAAAAAGAGATAAGGCAGTGTATGATAAGATGAAACTAATTGGGATGAGGAAGACCCTTGTTTAA 192 0.3698 MVERCRIGYEEHNKWYFISHKDKKYPRGIRTNRATMVGLWKATKRDKAVYDKMKLIGMRKTLV. 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01358 63 ProSiteProfiles NAC domain profile. 1 63 IPR003441 GO:0003677|GO:0006355
Seca6g01358 63 Gene3D NAC domain 1 63 IPR036093 GO:0003677|GO:0006355
Seca6g01358 63 Pfam No apical meristem (NAM) protein 11 63 IPR003441 GO:0003677|GO:0006355
Seca6g01358 63 SUPERFAMILY NAC domain 9 63 IPR036093 GO:0003677|GO:0006355
Seca6g01358 63 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01358 Seca-Chr6 60606754 60606945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01358 3 63 NAC Transcription Factor Family AT2G18060 83.607 1.84e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca6g01358 NAM 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01358 - - ming:122061975 116.701