Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01349 ATGGTTCCAAGATCAATGTCTATATTGCTTTGTATCCTTGTCATATTGATATCTCAATCCAACGCTCAGCCAGGATTCCTACGCAACTTTTGTATCGATGACAATGGTAATTACACTGCTAACAGTACCTACCAGAATAACCTAAATACCCTTTTGTCTAACCTTTCCTCAAACACACAAATTGACTATGGTTTCTACAATCTTTCTTACGGCCAAGGTAGTGACAGAGTAAACGCAATTGGGCTGTGTAGAGGGGATGTTAAACCAGATGCTTGTCGTAGTTGGCTCAATGATTCGAGAGTGCTTCTCACACAACTCTGTCCAAATCAGAAAGAGGCAATTGGGTGGTATGACAATTGCATGTTACGCTACTCCAATCGCTCCTCAATATTTAACAGAAGGGAAAGTACACCTAGTTTCTCTATGAGTGACGGTAGTTATGCTACAGATGTTGAACAATTCAATGAGATGTTAAGGAACTTGCTAGAGAGCCTCGTAAGCAATGCTTCATCAGGGGACTCCCTGCATAAATTTGCTACAGGAAATGTAAGGTCAGAATTTCAAACTATATTTGGTCTTGTGCAGTGTACACCTGATTTGTCAGAGCTAGATTGCAATGCATGTTTGATTGGGGCTATCTCAGAAATCCCACAATGTTGTGATAGCAAGGAAGGTGGTACAATTCTAAGACCTAGCTGTAACTTCAGATATAAGACATACCCTTTCTATGATTCTACCAATATTGCAGCACCACCAACAGGGCCTGCTCTTCGTCCCTCATCCACACAAGGTTCTGTTTTGGCAGGGAAGACCAACACACCGCGAACTATAATTGTAATAGTTGCACCAATTATTGCCTGTGTCACATTAGTCATCCTTATCTGCATCTATTTAAGAAAGAGGAGGCCACCGAAACATACCGAAGGACTAGTTTCAACTCATTCCCATTTGAAGGTGAAAATGGTGATGAAATTAGACCAACTGAGACGTGGCAATTGGACTTCGCCACCATCATGGACGCTACTAATAACTTTTCTCATGCAACTAATAGGCCCTGAATTACTTTTATCAAACTCAATTTTTCAGGGTAGACTCTCTGATGGTCAGGAAGTTGCAGTCAAAAGGTTGTCTAGGAATTCCATGCAAGGAGATACAGAGTTTAAGAATGAAGTGGTGTTAGTGGCCAAGCTTCAGCACCGAAATTTAGTTAGGCTACTAGGTTTCTGTTTGGAAAGAAAGGAAAGGCTACTGGTCTATGAGTTTGTTTCCAATAAAAGCCTTGATTTCTTTATATTTGATCAAATAAAACGTGCACAATTGGATTGGGAAAGGAGATACAAAATCATAGGAGGCATTGCCAGAGGTCTTCTTTACCTTCATGAGGATTCACGTTTGAGGATTGTTCATCGTGATCTCAAAGCGAGCAACATTCTTTTAGATGAAGATATGAACCCTAAGATATCAGATTTTGGCATGGCAAGATTAGTTGGAATAGATCAAACACAGGGAAATACAAATAGAATTGTTGGAACCTATGGATATATGGCACCTGAGTATGCTCTCCATGGACTATTCTCAGTGAAATCTGATGTTTATAGTTTTGGAGTACTTCTTCTAGAGATTGTGAGTGGCCAGAAAAATAGCAGTGTCCGTGGAGGGGAGAATGTACAGGATCTAGTAACCTTTGCATGGCAAAAGTGGAGGGAAGGGACTGCCCCAAGTATTGTTGATCCTACAATTACTGATGGTTCAAGAAATGAAATATTGAGATGCATCCATATTGCCTTGCTTTGTGTTCAGGAAAGTGTAGCTGACAGACCAACCATGGCTTCAGTTGTACTTATGCTTAACAGCTACTCTGTTACTCTCCCATTGCCCTCCCAGCCTGCTTACTTTATCCATGGTAGAACGGGTTTATCAAACATTTATTCAGAAGAGTATGATTCAGAGACAAGAAGATCAACTGAATCAAATATTCACTCTGTTCAATCTTCAGTTAATGAAGCTCCCATTACTGAACCATTTCCTCGCTAG 2034 0.4051 MVPRSMSILLCILVILISQSNAQPGFLRNFCIDDNGNYTANSTYQNNLNTLLSNLSSNTQIDYGFYNLSYGQGSDRVNAIGLCRGDVKPDACRSWLNDSRVLLTQLCPNQKEAIGWYDNCMLRYSNRSSIFNRRESTPSFSMSDGSYATDVEQFNEMLRNLLESLVSNASSGDSLHKFATGNVRSEFQTIFGLVQCTPDLSELDCNACLIGAISEIPQCCDSKEGGTILRPSCNFRYKTYPFYDSTNIAAPPTGPALRPSSTQGSVLAGKTNTPRTIIVIVAPIIACVTLVILICIYLRKRRPPKHTEGLVSTHSHLKVKMVMKLDQLRRGNWTSPPSWTLLITFLMQLIGPELLLSNSIFQGRLSDGQEVAVKRLSRNSMQGDTEFKNEVVLVAKLQHRNLVRLLGFCLERKERLLVYEFVSNKSLDFFIFDQIKRAQLDWERRYKIIGGIARGLLYLHEDSRLRIVHRDLKASNILLDEDMNPKISDFGMARLVGIDQTQGNTNRIVGTYGYMAPEYALHGLFSVKSDVYSFGVLLLEIVSGQKNSSVRGGENVQDLVTFAWQKWREGTAPSIVDPTITDGSRNEILRCIHIALLCVQESVADRPTMASVVLMLNSYSVTLPLPSQPAYFIHGRTGLSNIYSEEYDSETRRSTESNIHSVQSSVNEAPITEPFPR. 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01349 677 FunFam Cysteine-rich receptor-like protein kinase 10 138 242 - -
Seca6g01349 677 Gene3D - 25 128 IPR038408 -
Seca6g01349 677 Gene3D - 138 242 IPR038408 -
Seca6g01349 677 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 360 669 - -
Seca6g01349 677 ProSiteProfiles Gnk2-homologous domain profile. 136 242 IPR002902 -
Seca6g01349 677 ProSiteProfiles Protein kinase domain profile. 344 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01349 677 Pfam Salt stress response/antifungal 31 126 IPR002902 -
Seca6g01349 677 Pfam Salt stress response/antifungal 145 240 IPR002902 -
Seca6g01349 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Seca6g01349 677 MobiDBLite consensus disorder prediction 647 677 - -
Seca6g01349 677 FunFam cysteine-rich receptor-like protein kinase 10 422 623 - -
Seca6g01349 677 MobiDBLite consensus disorder prediction 656 670 - -
Seca6g01349 677 SUPERFAMILY Protein kinase-like (PK-like) 360 640 IPR011009 -
Seca6g01349 677 Gene3D Transferase(Phosphotransferase) domain 1 422 623 - -
Seca6g01349 677 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 24 129 - -
Seca6g01349 677 SMART serkin_6 354 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01349 677 FunFam Cysteine-rich receptor-like protein kinase 11 353 421 - -
Seca6g01349 677 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Seca6g01349 677 CDD STKc_IRAK 359 617 - -
Seca6g01349 677 Gene3D Phosphorylase Kinase; domain 1 350 421 - -
Seca6g01349 677 Pfam Protein tyrosine and serine/threonine kinase 366 613 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01349 Seca-Chr6 60349282 60354377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01349 4 677 Receptor kinase-like Gene Family AT4G21410 46.924 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g01349 PK_Tyr_Ser-Thr 2.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01349 - - gmx:113000773 887.871