Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01347 ATGGCAAGACTCAAACACCAAAATTTAGTCAGGCTCCTTGGTTTCTGTTATGAAAGAAAAGAACGGTTACTTGTCTACGAGTTTCTTCCCAATAGAAGCCTTGACTACTTCTTATTTGATTCAATTAAGCGCAGAGAGTTGGATTGGAAAATGCGATACAAAATAATTGAAGGCATTGCAAGGGGCCTTCTTTACCTTCATGAGGATTCTCAACTGAGGATTATTCATCGTGATCTTAAAGCAAGTAACATTCTTTTAGATGGAGAGATGAACCCTAAGATATCAGATTTCGGCTTGGCAAAGTTGTTTGTTGTGGATCAAACTCATGCTGTTGCAAGTAAAATTGCAGGAACCCTTGGATACATGGCACCTGAGTATGCAAGGCATGGAAAATTCTCAGCCAAGTCAGATGTCTTTAGTTTTGGTGTTATAATACTAGAGATTGTAAGTGGCCAAAAGAATGGTCGATTTCATAATGGAGAGAATGTGGAGCATCTATTAAGCTTTGAAAGGGTTGCTGACAGACCAACATTGGCTTCAGTTATGCTTATGCTTGATAGCCACTCTTTCTCTCTCCCAGTTCCCTTGCAACCTGCCTTTTATATGAAAGCTAGGATGGCTTCTATGGCCGTAGTTTCTAAAAGCATACTCTTATTTATTTTTTTCCTTGTCATTCTCATGATGCCTCTAGCCACTGCCCAGCCAGACTTCGTACACCATATTTGTTTTGAAAATTACGGCAATTACACTGCTAATAGCACCTTCCATGCCAACCTCATCACCCTTTTGTCCAACCTCTCTTCCAACACTGAAATTGATTATGGCTTCTACAATTTCTCCAAAGGCCAAAACTCTGACAAAGTTAACGCAATTGGGCTTTGTAGAGGAGACGTTAAGCCAGATGCTTGTCGTAGTTGCCTCAATGATTCCAGAGTCCTTCTCACACAACTCTGTCCAAATCAAAATGAGGCAATTGGGTGGTACGATAAATGCATGTTGCGTTACTCTAGCCGTTCAATGTTTGGGATTTTGCAATCTCAACCTTTGCGGAATATGCATAACTTGAAGAATGCAACAGATGTGAATGAGTACAATAAAGTGGTTAGTGACTTGCTGGATAGTTTACGAAGCAGAGCAGCTTCTGGTGACTCAGAAATGAAGTTTGCAGCTGCGAACAGAACAGGTCCAGGATTTCAAACAATATTTGGTCATGTTCAGTGCACACCTGATTTGTCAGAGATACAATGCAACCAGTGCTTGTTTACCGCAATCTCATTTATCCCAAACTGCTGTGCTGGCAAGATACGTGGTAGAATTTTCGCACCAAGTTGTAATATTAGATTTGACACTACGCCTTACTATGATCTTAACGCTCTGCACGTACAGCAACTTTCTCCTTCTCCTAATTCTCCATCCATCACTTCCACCAATGCAATGATTTTGGTTTTTGCAGGGGAAAAGAGCAATTCATCACGAACTGCCTTTGCCATAATTGTGCCAATTGTCTCCTTTGTAGTATTCCTCATCTTTATTTGCATCTATTTAAGGAGAAGGAAGCCAAGAAAGTATTTTGAAAGCAAGTCCAATGTACAAAATACTCATTCAACAGGTGAATCTGAAGCTGATGAATGTGAAATTGAACCTACTGAGACATTACAATTCGACTTCCAAACCATCATTGATGCTACAAATAACTTTTCAGATGAAAATAGGCTTGGACAGGGTGGATTTGGACATGTCTACAAGGGTAGGCTTCCCAATGACAAAGAAGTTGCTATCAAAAGGTTGTCCAAGAATTCTGGGCAAGGAGATATAGAATTTAAAAATGAACTGCTTTTAGTAGCAAAGCTTCAACATCGAAATTTAGCAAGGCTACTTGGCTTTTGTTTGGAAACAGGAGAAAGGATATTGGTCTACGAGTTTCTTCCCAATAAAAGCCTTGATTACTTCATATTTGATCCAATCAAGCGTTTATGTTTGGATTGGGAAAGGCGCTACAAGATTATAGAAGGTATTGCTCGAGGTCTTGTATATCTTCATGAGGATTCTCGATTGCGTGTTATTCACCGCGATCTCAAAGCAAGCAACATACTCTTAGATGATGACATGAATCCTAAGATATCAGATTTTGGCATGGCAAGACTATTTGATGCAGATCAAACTCTAGGAAATACAATAAGAGTTGTTGGAACCCATGGATATATGGCACCTGAATATGCATTACATGGACATTTCTCAGTGAAGTCAGATGTTTTTAGCTTCGGTGTGCTGGTTCTTGAGATAGTTAGTGGACATAGAAACAATGACATCCACAATGGCGATTATGTAGAACATCTAATAAACTTTGCATGGAGACACTGGAGGGAAGGGACAGCCTCAAATATTGTAGATCCAACAATGAACAATGATTCAAGAAGCGAAATGATGAGATGCATCCATATTGCATTACTTTGTGTTCAAGAAAATGTAGCCAATAGACCAACCATGGCAACAGTTGTTGCCATGCTTAACAACTACTCATGCACTCTTCCAGTACTCTCACAGCCTGCATATTTCATAAATGCTAGAGGTCCAATATCAGATACAAGGTCAGATGAATCAAGAATGCAAGCATCAACAAATGAGGCTTCCATTACCGAGGTAGATCCTCGCTAG 2655 0.3981 MARLKHQNLVRLLGFCYERKERLLVYEFLPNRSLDYFLFDSIKRRELDWKMRYKIIEGIARGLLYLHEDSQLRIIHRDLKASNILLDGEMNPKISDFGLAKLFVVDQTHAVASKIAGTLGYMAPEYARHGKFSAKSDVFSFGVIILEIVSGQKNGRFHNGENVEHLLSFERVADRPTLASVMLMLDSHSFSLPVPLQPAFYMKARMASMAVVSKSILLFIFFLVILMMPLATAQPDFVHHICFENYGNYTANSTFHANLITLLSNLSSNTEIDYGFYNFSKGQNSDKVNAIGLCRGDVKPDACRSCLNDSRVLLTQLCPNQNEAIGWYDKCMLRYSSRSMFGILQSQPLRNMHNLKNATDVNEYNKVVSDLLDSLRSRAASGDSEMKFAAANRTGPGFQTIFGHVQCTPDLSEIQCNQCLFTAISFIPNCCAGKIRGRIFAPSCNIRFDTTPYYDLNALHVQQLSPSPNSPSITSTNAMILVFAGEKSNSSRTAFAIIVPIVSFVVFLIFICIYLRRRKPRKYFESKSNVQNTHSTGESEADECEIEPTETLQFDFQTIIDATNNFSDENRLGQGGFGHVYKGRLPNDKEVAIKRLSKNSGQGDIEFKNELLLVAKLQHRNLARLLGFCLETGERILVYEFLPNKSLDYFIFDPIKRLCLDWERRYKIIEGIARGLVYLHEDSRLRVIHRDLKASNILLDDDMNPKISDFGMARLFDADQTLGNTIRVVGTHGYMAPEYALHGHFSVKSDVFSFGVLVLEIVSGHRNNDIHNGDYVEHLINFAWRHWREGTASNIVDPTMNNDSRSEMMRCIHIALLCVQENVANRPTMATVVAMLNNYSCTLPVLSQPAYFINARGPISDTRSDESRMQASTNEASITEVDPR. 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01347 884 Pfam Protein tyrosine and serine/threonine kinase 1 167 IPR001245 GO:0004672|GO:0006468
Seca6g01347 884 Gene3D - 234 340 IPR038408 -
Seca6g01347 884 Gene3D - 346 453 IPR038408 -
Seca6g01347 884 MobiDBLite consensus disorder prediction 860 884 - -
Seca6g01347 884 MobiDBLite consensus disorder prediction 864 884 - -
Seca6g01347 884 MobiDBLite consensus disorder prediction 527 546 - -
Seca6g01347 884 ProSiteProfiles Protein kinase domain profile. 1 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01347 884 Gene3D Phosphorylase Kinase; domain 1 526 641 - -
Seca6g01347 884 FunFam Cysteine-rich receptor-like protein kinase 10 527 641 - -
Seca6g01347 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 74 86 IPR008271 GO:0004672|GO:0006468
Seca6g01347 884 FunFam Cysteine-rich receptor-like protein kinase 10 348 453 - -
Seca6g01347 884 ProSiteProfiles Gnk2-homologous domain profile. 237 340 IPR002902 -
Seca6g01347 884 ProSiteProfiles Protein kinase domain profile. 566 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01347 884 SMART serkin_6 566 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01347 884 SMART serkin_6 1 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01347 884 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 235 340 - -
Seca6g01347 884 FunFam cysteine-rich receptor-like protein kinase 10 642 843 - -
Seca6g01347 884 CDD STKc_IRAK 572 838 - -
Seca6g01347 884 FunFam cysteine-rich receptor-like protein kinase 10 29 171 - -
Seca6g01347 884 SUPERFAMILY Protein kinase-like (PK-like) 1 211 IPR011009 -
Seca6g01347 884 Pfam Protein kinase domain 567 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01347 884 SUPERFAMILY Protein kinase-like (PK-like) 551 865 IPR011009 -
Seca6g01347 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 687 699 IPR008271 GO:0004672|GO:0006468
Seca6g01347 884 Pfam Salt stress response/antifungal 242 337 IPR002902 -
Seca6g01347 884 Pfam Salt stress response/antifungal 356 450 IPR002902 -
Seca6g01347 884 Gene3D Transferase(Phosphotransferase) domain 1 642 843 - -
Seca6g01347 884 Gene3D Transferase(Phosphotransferase) domain 1 1 190 - -
Seca6g01347 884 ProSitePatterns Protein kinases ATP-binding region signature. 572 594 IPR017441 GO:0005524
Seca6g01347 884 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 242 883 - -
Seca6g01347 884 ProSiteProfiles Gnk2-homologous domain profile. 346 453 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01347 Seca-Chr6 60322239 60335926 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01347 217 884 Receptor kinase-like Gene Family AT4G21410 47.737 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g01347 Pkinase 4.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01347 - - lang:109353867 1029.24