Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01344 ATGTCGAAGAAGAAGTCTAGCTTAGGTCGCCAAAAGATCCCGATTGAGAAAATACCCAAAAAAAGTCATCTTCAAGTTACATTCTCAAAGCGTCGTTCAGGACTCTTCAAGAAAGCTAGTGAGTTGTGTACCCTTTGTGGTGTAGAGATTGCAATTGTTGTTTTCTCCCCTGCTGATAAGGCATTCTCTTTTGGCCATCCAGAAGTTGAGTCCATCATTGATCGTTATTTGACTCGAAACCCTCCACAAGAGTCTAGTGCTCACCAAATTGTTGAGGCGCATAGAAATGCTAATGTGCGTGATCTCAACATGCAGCTGACTCAACTTCTTAGCCATTTGGAAGTTGAAAAGAAACAAGGAGAAGAGTTAGACCATGTGAGGAGAGCAAGGCAAAGGCAATTTTGGTGGGAGAGCCCAGTTGATGAGCTTAGCTTGAATGAATTGTTACAATCGACGAAGAAGTCTAGCTTAGGTCGCCAAAAGATCCCGATTGAGAAAATACCAAAAAAAAGTCATCTTCAAGTTACATTCTCAAAGCGTCGTTCAGGACTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGTAGAGATCGCAATTGTTGTTTTCTCCTCTGCTGATAAGGCATTCTCTTTTGGCCATCTAGAAGTTGAGTACATCATTGATCGTTATTTGACTCGAAACCCTCCACAAGAGTCTAGTGCTCAGCAAATTGTTGAGGCACATAGAAGTGCTAATGTGCGTGATCTCAACATGCAGCTGACTCAGCTTCTTAGCCATTTGGAGGTTGAGAAGAAACAAGGAGAAGAGTTAGACCATGTGAGGAGAGCTAGGCAGAGGCAATATTGGTGGGAGAGGCCAATTGATGAGCTTGGCTTGAATGAATTGCTACAGTTAAATGCTTCTATTGAGGACATGAAAAAGAATTTAGGAAAACTTGCTAGCAAATGCATGACGGAGCAATCCAACATATCTTCAACAAATGTTATTGGGGCTAATGGAATTGGACGTTTTGATGCCTTTGAGAACAAGTCTGGTGGTGGTGTTGGGATTAACATTTCTTCCACAGTTCCTAATGCACATAATTGTCTTGGTTTTCGACAAGGCCATGGGTATCTTTGA 1125 0.4213 MSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESIIDRYLTRNPPQESSAHQIVEAHRNANVRDLNMQLTQLLSHLEVEKKQGEELDHVRRARQRQFWWESPVDELSLNELLQSTKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSSADKAFSFGHLEVEYIIDRYLTRNPPQESSAQQIVEAHRSANVRDLNMQLTQLLSHLEVEKKQGEELDHVRRARQRQYWWERPIDELGLNELLQLNASIEDMKKNLGKLASKCMTEQSNISSTNVIGANGIGRFDAFENKSGGGVGINISSTVPNAHNCLGFRQGHGYL. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01344 374 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Seca6g01344 374 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Seca6g01344 374 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Seca6g01344 374 PRINTS MADS domain signature 194 215 IPR002100 GO:0003677|GO:0046983
Seca6g01344 374 PRINTS MADS domain signature 159 179 IPR002100 GO:0003677|GO:0046983
Seca6g01344 374 PRINTS MADS domain signature 179 194 IPR002100 GO:0003677|GO:0046983
Seca6g01344 374 SUPERFAMILY SRF-like 158 232 IPR036879 GO:0003677|GO:0046983
Seca6g01344 374 Gene3D - 88 162 - -
Seca6g01344 374 Gene3D - 240 333 - -
Seca6g01344 374 Gene3D - 169 239 IPR036879 GO:0003677|GO:0046983
Seca6g01344 374 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Seca6g01344 374 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Seca6g01344 374 ProSiteProfiles MADS-box domain profile. 157 217 IPR002100 GO:0003677|GO:0046983
Seca6g01344 374 FunFam Agamous-like MADS-box protein AGL62 169 235 - -
Seca6g01344 374 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Seca6g01344 374 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 166 213 IPR002100 GO:0003677|GO:0046983
Seca6g01344 374 Coils Coil 297 317 - -
Seca6g01344 374 SMART madsneu2 157 216 IPR002100 GO:0003677|GO:0046983
Seca6g01344 374 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Seca6g01344 374 PANTHER MADS BOX PROTEIN 10 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01344 Seca-Chr6 60161119 60168233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01344 154 330 Type I MADS-box Gene Family AT5G60440 49.444 1.04e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca6g01344 SRF-TF 7.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01344 - - tpra:123905348 316.235