Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01343 ATGATAACTGAGTTGTTCACATCTGGGAGTTTGAGGCAGTATAGGAAGAAACATAAGAATGTGGATTTGAAAGCCATCAAGAACTGGGCGAGGCAGATTCTTCGAGGCTTGTGTTTTCTGCATAGTCACAATCCTCCTATTATTCATAGGGACTTAAAATGTGATAATATTTTTGTTAATGGGAATACTGGACAAATTAAGATTGGAGATCTTGGATTGGCAATTGTCATGCAGCAGCCTACTGCCCGTAGTGTTATTGGTACACCAGAATTCATGGCCCCTGAGCTTTATGAGGAAGAATACAACGAACTTGTTGACATATATTCCTTTGGCATGTGCATCTTGGAAATGATCACCTGTGAATACCCGTATAGGGAATGTAAAAATCCAGCACAGATATATAAGAAAGTTACCTCTGGTATAAAGCCTGCTGCTCTTGCTAAAGTAAAGGATCCTGAAGTGAAGCAATTTATAGAGAAGTGTCTAGTTCCAGCATCTATGAGATTGCCTGCATCTGAACTACTAAAAGATCCATTCCTTGCAACTGAAAATGCAAAGGAGATCAATCATGATATGCTGCAAGTGCCTGAACCCCCCACCAAATTGGTGAATCCACCATCATGTGAGCCTCATCCCATGGAGATAGATTTAAACCTCAGGCATACTTCACCTGGCTCCTCTGTGACAAGAATTATAGAAACTTCTCAAGTTTCGAGTTTTGATCTCCTGAGGAAGACTGAGAATAACGAATTTAGGTTAAGAGGGGAGAAAAATGCAGAAAGTACAATTTCACTCACTCTGAGGATTGCTGATGCTCATGGTAAGTGTGATTCAGATTTTTCTTTTATTTTACTGTGTGCTAAATGTTAA 870 0.3966 MITELFTSGSLRQYRKKHKNVDLKAIKNWARQILRGLCFLHSHNPPIIHRDLKCDNIFVNGNTGQIKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMCILEMITCEYPYRECKNPAQIYKKVTSGIKPAALAKVKDPEVKQFIEKCLVPASMRLPASELLKDPFLATENAKEINHDMLQVPEPPTKLVNPPSCEPHPMEIDLNLRHTSPGSSVTRIIETSQVSSFDLLRKTENNEFRLRGEKNAESTISLTLRIADAHGKCDSDFSFILLCAKC. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01343 289 FunFam probable serine/threonine-protein kinase WNK9 6 185 - -
Seca6g01343 289 Pfam Protein kinase domain 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01343 289 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 278 - -
Seca6g01343 289 SMART serkin_6 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01343 289 Gene3D Transferase(Phosphotransferase) domain 1 6 188 - -
Seca6g01343 289 SUPERFAMILY Protein kinase-like (PK-like) 1 236 IPR011009 -
Seca6g01343 289 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Seca6g01343 289 ProSiteProfiles Protein kinase domain profile. 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01343 Seca-Chr6 60152841 60156040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01343 1 284 MAP Kinase Kinase Kinase AT5G41990 65.614 1.69e-118 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca6g01343 Pkinase 1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01343 K08867 - gmx:100783717 491.5