Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01342 ATGGCTTTGGCTTCATCATCAACAACAACTAAACAAGTTGGTGGTCGAAGGTTGCTTCTTTCAGATGGCTTCCCCGATTGGCTATCTTCTTCAGATAGAAAGCTTTTTCAGACATCACCAAAAGTTGATATTGTGGTGGCTCAAGATGGCACTGGGAATTATAAGACCATATCAGAAGGTGTGGCTGCAGTTGCTAAGCTTAGTGGAAAAAGGGTAGTTGTTATTCACGTCAAAGCAGATGTTTATAAAGAGAGTGTTGACATTAAGAGGTCAATTAAGAACTTGATGATCATTGGATATGGGATGGGTTCCACTATTGTTACTTGTAATAATAACGCACAAGATGGCTCCACTACGTTTCGTTCAGCCACTTTCGGGAATGAAGAAGACATACCTGCTACGGGAATGAAGCTCTTGAGGAAGCCAACAATGGCGGACTGA 441 0.4195 MALASSSTTTKQVGGRRLLLSDGFPDWLSSSDRKLFQTSPKVDIVVAQDGTGNYKTISEGVAAVAKLSGKRVVVIHVKADVYKESVDIKRSIKNLMIIGYGMGSTIVTCNNNAQDGSTTFRSATFGNEEDIPATGMKLLRKPTMAD. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01342 146 PANTHER PECTINESTERASE 18 128 - -
Seca6g01342 146 Gene3D - 38 138 IPR012334 -
Seca6g01342 146 Pfam Pectinesterase 43 128 IPR000070 GO:0030599|GO:0042545
Seca6g01342 146 SUPERFAMILY Pectin lyase-like 39 127 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01342 Seca-Chr6 60059397 60059837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01342 16 126 Carbohydrate Esterase AT1G23200 56.410 9.52e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01342 - - gmx:100816802 186.422