Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01338 ATGACGGAGGTGGCGAGATCAGTGGTACATGAGGTTTTCGGAGAAAGGATCATCGACGTGGATGAGCCAATCGTCGATTACATCGTCAACGTCCTCGCCGACGATGACTTCGATTTTGGACTCGACGGTGAAGGAGCTTTCGAAGCCCTCGGAGAGCTCTTCGTCGCCGCCGGTTGCGTCTACGACTTCCCCGAATGTCGCTCCGTATGCAGCAAACTATCTGACAAGTTTGGGAAGCACGGTTTGGTGAAGGTGAAGCCAACGGTGCGAAGCCTCGCGGCGCCGTTTCGAATGAACGAAGGAATGGACGACGGTGTTGCTCCCAAGAAGAAGCCTGAGCCTGTCGACGGTCCTCTCTTAACGGAACGCGACCGTATAAAGCTCGAAAGGAGAAAGAGGAAGGATGAACGCCAAAGAGAGGCACAGTACCAAATGCATTTGAAGGAGATGGAAGCGGCGAGAGCGGGAATGCCTGTGGTGTGTGTTAGGCACGAGGAGGGTGGTGGACCCACTGTGAAGGACATTCATATGGAGAACTTCAATATCTCTGTTGGTGGCCGTGATCTTATTGTGGATGGTGTTGTCACACTCTCTTTTGGAAGGCATTATGGTGGACTTTTCCTCTTTTCATTCTTTCGGCTTGTTGGAAGAAATGGGACGGGGAAAACAACTTTCCTCAGGCACATGGCTATGCATGCCATTGACGGCATTCCCAGGAATTGCCAGATATTGCACGTGGAGCAAGAGGTCGTTGGTGATGATACAACTGCGTTGCAGTGTGTTCTCAATTCTGACATTGAGAGAACTCAGCTTCTGGAGGAAGAAGCTGAATTACTTGCCAAACAGGAAAACATTGAAAAGGGCAATAATAATGTGAATGAAGTGGTTGAAAGAGATGCTATTTCGCAAAGGCTGGAGGAATTATACAAGAGGCTTGAGTTCATTGATGCTTATTCTGCGGAAGCACGAGCAGCATCAATACTTGCAGGTCTGAGTTTCTCTCCTGAGATGCAGAAGAAGGCAACAAAAACATTTTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCACTGTTTATAGAGCCTGATATACTGCTTCTTGATGAGCCTACGAACCATCTTGATCTTCATGCTGTCTTATGGCTTGAATCATACCTGGTTAGATGGCCAAAAACATTTATTGTTGTTTCTCATGCTAGAGAATTTTTAAATACGGTGGTTACTGATATAATTCACTTACAAAACCAAAAACTGACCACTTACAAAGGAAATTATGATACTTTTGAGAAGACCCGAGAAGAACAAATTAAAAACCAACAGAAAGCATTAGAGGCAAATGAACGTGCAAGATCTCATATGCAGGCCTTCATTGACAAGTTCCGATATAATGCCAAGAGGGCATCACTTGTTCAATCTAGAATCAAGGCTTTGGATCGAATGGGCCATGTAGATGAAATTGTTAATGATCCAGACTACAAGTTTGAGTTCCCCACTCCAGATGATAGACCAGGTCCACCGATAATAAGTTTCAGTGATGCATCATTTGGTTATCCTGGGGGGCCTATTCTATTTAAGAATTTGAACTTTGGAATTGATCTTGACAGCCGTATTGCAATGGTAGGACCAAATGGCATTGGCAAGTCTACTATACTTAAGTTAATTGCTGGGGAACTACAACCAAGTTCCGGGACTGTCTTCCGATCTGCTAAGGTTCGTATAGCAGTGTTCAGTCAGCACCATGTTGATGGACTTGACTTATCCTCAAATCCTCTTCTGTATATGATGCGCTGCTATCCTGGAGTTCCAGAGCAGAAGCTTCGAGGTCACTTGGGTTCTTTTGGTGTAACTGGAAATCTTGCACTTCAGCCCATGTATACTTTGTCAGGTGGACAGAAAAGCAGGGTTGCCTTTGCAAAGATAACGTTTAAGAAGCCACACATAATATTACTTGATGAGCCATCCAATCATCTGGATTTGGATGCTGTTGAGGCGCTAATTCAAGGTCTTGTGATGTTCCAAGGAGGCATTCTCATGGTGAGTCACGATGAGCATCTCATCTCTGGAAGCGTGGAGGAGCTATGGGTTGTATCCGAAGGAAGAGTGACACCATTCCATGGCAACTTCCATGATTATAAGAAGATACTCCAGTCATCTTAG 2160 0.4546 MTEVARSVVHEVFGERIIDVDEPIVDYIVNVLADDDFDFGLDGEGAFEALGELFVAAGCVYDFPECRSVCSKLSDKFGKHGLVKVKPTVRSLAAPFRMNEGMDDGVAPKKKPEPVDGPLLTERDRIKLERRKRKDERQREAQYQMHLKEMEAARAGMPVVCVRHEEGGGPTVKDIHMENFNISVGGRDLIVDGVVTLSFGRHYGGLFLFSFFRLVGRNGTGKTTFLRHMAMHAIDGIPRNCQILHVEQEVVGDDTTALQCVLNSDIERTQLLEEEAELLAKQENIEKGNNNVNEVVERDAISQRLEELYKRLEFIDAYSAEARAASILAGLSFSPEMQKKATKTFSGGWRMRIALARALFIEPDILLLDEPTNHLDLHAVLWLESYLVRWPKTFIVVSHAREFLNTVVTDIIHLQNQKLTTYKGNYDTFEKTREEQIKNQQKALEANERARSHMQAFIDKFRYNAKRASLVQSRIKALDRMGHVDEIVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRGHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVMFQGGILMVSHDEHLISGSVEELWVVSEGRVTPFHGNFHDYKKILQSS. 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01338 719 ProSitePatterns ABC transporters family signature. 345 359 IPR017871 GO:0005524|GO:0016887
Seca6g01338 719 CDD ABCF_EF-3 175 418 - -
Seca6g01338 719 MobiDBLite consensus disorder prediction 101 120 - -
Seca6g01338 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 708 IPR027417 -
Seca6g01338 719 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 153 718 - -
Seca6g01338 719 FunFam ATP-binding cassette sub-family F member 3 471 719 - -
Seca6g01338 719 Coils Coil 271 291 - -
Seca6g01338 719 SMART AAA_5 208 418 IPR003593 GO:0016887
Seca6g01338 719 SMART AAA_5 534 701 IPR003593 GO:0016887
Seca6g01338 719 Pfam ABC transporter 412 492 IPR032781 -
Seca6g01338 719 CDD ABCF_EF-3 509 701 - -
Seca6g01338 719 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 509 718 IPR003439 GO:0005524
Seca6g01338 719 MobiDBLite consensus disorder prediction 103 120 - -
Seca6g01338 719 FunFam ABC transporter F family member 3 127 454 - -
Seca6g01338 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 427 IPR027417 -
Seca6g01338 719 ProSitePatterns ABC transporters family signature. 628 642 IPR017871 GO:0005524|GO:0016887
Seca6g01338 719 Gene3D - 177 467 IPR027417 -
Seca6g01338 719 Pfam ABC transporter 526 656 IPR003439 GO:0005524
Seca6g01338 719 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 441 IPR003439 GO:0005524
Seca6g01338 719 Pfam ABC transporter 213 373 IPR003439 GO:0005524
Seca6g01338 719 Gene3D - 472 719 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01338 Seca-Chr6 59957772 59973458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01338 466 670 Calmodulin-binding Proteins AT2G36910 26.582 1.02e-10 63.5