Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01334 ATGAAGAGAGTCACGATGGGTGTTCCACAAACAGCAACAAGTCCTCCTCCTCCACACCTGTATCCTCAGGAACTTCAGCTTAAGCTTTACCAGGCCTTCATATTCTCAATTCCCATACTCTTTTCCATTATTCTGTTTCTCCTCTTTTACTTGTTCTACCTCAAGAGAAGGGCTTCCTCTTCTCCACACTTATTACTTCCCAGGAGTACTGCCAATGTTCCATCAACTAACTATCGCTATCGTTCCTCACCTTGTCGTTTGGATTTGACTGTGCAAATCCTGGACAAACTTCCAAGAATTTTATTTGATGAGGATTTGCTAGCAAGGGATTCACTATGTTGTGTTTGTTTAGGAGAATTTGAGATGAAAGAAGAGGTGCTACAGATTCCTTATTGCAAGCATGTGTTCCACATCGATTGCATACATCACTGGCTACAATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACCAAGTTCCTCAATCCAGCACCGCCTATTAATATTATATCAGACCCACACCAGCAACAAGGACAAGGTGGTGCTATCATTTCACACCCTCCATTACAAATCTTATCATTGCCACCTCAAACAGATCAAAATGAACCTCCTGCTGCTGCTTCCACAAGGGAATGA 648 0.4259 MKRVTMGVPQTATSPPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSSPHLLLPRSTANVPSTNYRYRSSPCRLDLTVQILDKLPRILFDEDLLARDSLCCVCLGEFEMKEEVLQIPYCKHVFHIDCIHHWLQSNSTCPLCRCSIIPTTKFLNPAPPINIISDPHQQQGQGGAIISHPPLQILSLPPQTDQNEPPAAASTRE. 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01334 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 160 IPR013083 -
Seca6g01334 215 SMART ring_2 113 154 IPR001841 -
Seca6g01334 215 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Seca6g01334 215 Pfam Ring finger domain 113 155 IPR001841 -
Seca6g01334 215 CDD RING-H2_EL5-like 113 155 - -
Seca6g01334 215 PANTHER RING-H2 FINGER PROTEIN ATL16 14 177 IPR044600 GO:0016567|GO:0016740
Seca6g01334 215 SUPERFAMILY RING/U-box 91 167 - -
Seca6g01334 215 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 82 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01334 Seca-Chr6 59649726 59652447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01334 18 194 C3H Transcription Factor Family AT4G10150 36.313 5.50e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01334 K19039 - gmx:100813129 296.204