Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01321 ATGTTACTTCTAGAGGGCATTGAAATGTATGGATTTGGGAATTGGAGTGAAGTCGCAGAATATGTTGGAACGAAAAGCAAATCTCAATGTATTGACCACTATAATGCTGTATATATGAATTCCCCATGTTTTCCTCTCCCTGATTTGTCTCATGTTATGGGAAAGAGAAGAGAGGAACTCCTTGCCATGGCAAAAGGACATGAAGTCAATAAAGATTTTCCTCCAACACCAGAGCTTTCTCCGAAAGAAGAACCTTCCTTCTCTGACGGAATTAAGTACACTTCACCAATTTACAGTGATTATTTAAATTAA 312 0.3782 MLLLEGIEMYGFGNWSEVAEYVGTKSKSQCIDHYNAVYMNSPCFPLPDLSHVMGKRREELLAMAKGHEVNKDFPPTPELSPKEEPSFSDGIKYTSPIYSDYLN. 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01321 103 ProSiteProfiles SANT domain profile. 1 42 IPR017884 -
Seca6g01321 103 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 42 IPR017930 -
Seca6g01321 103 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 86 - -
Seca6g01321 103 Gene3D - 1 42 - -
Seca6g01321 103 SUPERFAMILY Homeodomain-like 2 41 IPR009057 -
Seca6g01321 103 Pfam Myb-like DNA-binding domain 2 35 IPR001005 -
Seca6g01321 103 CDD SANT 2 35 IPR001005 -
Seca6g01321 103 ProSiteProfiles Myb-like domain profile. 1 38 IPR001005 -
Seca6g01321 103 MobiDBLite consensus disorder prediction 66 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01321 Seca-Chr6 54209890 54212281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01321 1 95 EF-hand Containing Proteins AT3G07740 55.789 2.62e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca6g01321 Myb_DNA-binding 7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01321 K11314 - gmx:100779424 164.081