Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01308 ATGGTGGAAGCTTCAGGGATCATGTACGCTACTCTCATTCCTGGTTTTAGCCCAACAATTCAGAGAATGAGAATCCATGTGGGTCACCGTCAAGTAACTGTATCACGCAGACACCAAATTCATTGTTCAGCCTCTGCAAGTGCAAATGGTGCCACTCAGAGTCAAACCTCAGTGATGGAAACTATTCCTTGGGGTTGTGATATTGATTCTCTAGAGAATGCATCAGCTCTGCAAAGATGGTTATCAGAGTCAGGGCTTCCACTACAGAAGATGGCCATTGAAAAAGTGGATGTGGGAGAGAGAGGACTTGTTGCCTTGAAGAATATAAGGAAAGGGGAGAAACTGCTCTTTGTGCCTCCCTCACTAGTTGTAACGGCAGATTCTGAGTGGAGCTGCCCAGAAGCTGGTGAGGTGTTGAAAAGGAATTCAGTGCCAGATTGGCCACTGCTTGCAACTTACCTCATTAGTGAAGCTAGTCTTATGAAATCTTCAAGATGGTTCAATTATATATCGGCCTTGCCTCGTCAACCTTACTCACTTCTTTACTGGTCACAAGCAGAACTAGATCGCTACTTGGAAGCTTCACAGATTAGGGAGAGAGCAATTGAAAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAATACCCTGATTTATTCCCTGAAGAGGTGTTCAACATGCAGTCCTTCAAATGGGCATTTGGCATTCTTTTCTCCCGCTTGGTCCGGTTACCCTCAATGGATGGGAAGGTTGCCTTGGTTCCTTGGGCAGATATGCTTAATCACAGTTGTGATGTGGAGACATTTTTGGATTATGATAAGGTGTCGAAGGGAATTTTCTTTACGACAGATCGGCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCAAATGGGGAGCTTCTGTTATCTTATGGTTTTGTTCCAAGGGAGGGCGCTAATCCTAGTGATTCAGTTGAGTTGTCCCTGTCACTCAAGAAATCTGATGGGTCCTATAAGGAGAAGTTAGAAATGTTGAAGAAGTATGGATTATCGGGATCTCAGTGTTTTCCTATAAAGATTACTGGTTGGCCAGTAGAGTTAATGGCTTATGCTTATTTAGCTGTCAGTCCTTCAAGCATGAGAGGGAAATTTGAAGAGATGGCTGCTGCAGCGTCGAATAAAGTTACCTCCAAGAAGGACTTGAGATATCCTGAAATAGAGGAGGAAGCATTGCAATTCATACTAGATAGCTGTGAATCCAGTATATCAAAATACAACAAGTTCTTGCAGGTAAGTGGATCACTGGATTTGGATGTGACTTCCCCAAAACAACTCAATCGTAGACTCTTTCTAAAACAGCTAGCTGTAGACTTGTGTACTAGCGAGCGAAGGATATTATTCCGTGCTCAATATATACTGCGAAGAAGACTGAGGGATATGAGGGCTGGGGAATTAAGAGCTTTAAAAATCTTTGATAGGTTCCGGAACCTTTTCAGATGA 1515 0.4251 MVEASGIMYATLIPGFSPTIQRMRIHVGHRQVTVSRRHQIHCSASASANGATQSQTSVMETIPWGCDIDSLENASALQRWLSESGLPLQKMAIEKVDVGERGLVALKNIRKGEKLLFVPPSLVVTADSEWSCPEAGEVLKRNSVPDWPLLATYLISEASLMKSSRWFNYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERINNVIGTYNDLRLRIFSKYPDLFPEEVFNMQSFKWAFGILFSRLVRLPSMDGKVALVPWADMLNHSCDVETFLDYDKVSKGIFFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPREGANPSDSVELSLSLKKSDGSYKEKLEMLKKYGLSGSQCFPIKITGWPVELMAYAYLAVSPSSMRGKFEEMAAAASNKVTSKKDLRYPEIEEEALQFILDSCESSISKYNKFLQVSGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILFRAQYILRRRLRDMRAGELRALKIFDRFRNLFR. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01308 504 SMART set_7 89 311 IPR001214 GO:0005515
Seca6g01308 504 PIRSF RMT_SET 4 501 IPR011192 GO:0009507|GO:0030785
Seca6g01308 504 Pfam Rubisco LSMT substrate-binding 338 471 IPR015353 -
Seca6g01308 504 ProSiteProfiles SET domain profile. 89 305 IPR001214 GO:0005515
Seca6g01308 504 Pfam SET domain 101 305 IPR001214 GO:0005515
Seca6g01308 504 CDD SET_RBCMT 84 319 IPR044431 GO:0016279|GO:0018022
Seca6g01308 504 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 55 318 - -
Seca6g01308 504 Gene3D - 324 493 IPR036464 -
Seca6g01308 504 Gene3D set domain protein methyltransferase, domain 1 29 318 - -
Seca6g01308 504 FunFam Rubisco methyltransferase family protein 324 487 - -
Seca6g01308 504 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 335 498 IPR036464 -
Seca6g01308 504 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 71 442 - -
Seca6g01308 504 SUPERFAMILY SET domain 73 321 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01308 Seca-Chr6 53418286 53425845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01308 76 274 NAC Transcription Factor Family AT3G56570 22.886 2.98e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca6g01308 SET 5.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01308 - - cam:101500121 858.981