Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01298 ATGGGCTTGTCAAGTCTCCCAGCACCATCTGAAGGAGTGTTATGTGCACTTCTGGCAAACACTGCCATGTCAATATCCATATTTAAAGGCATTGTTAGGACAATCCTACACATTGTTGGTATCCATGTTTCATCATCCTCCACTTCCTCTCCAACAGATGTCTCCCAAAACCCACCTGAGTCATTTGAATTCCATATCAGTCCCTCAGAGGGATTCATTGAAGAGATCAAAAGCAGGACACCAACTCTTAGGTTTGACAGTGTTTGTTCAGGCTGCAAACAAGAACAACCTGAACATGAGTGCTCAGTATGTCTCACTGAATTTGAACCAGAATCAGAGATAAACCACTTATATTGTGGCCATCTCTTCCATAAAGCATGCTTGGAGAAGTGGTTGAACTATTGGAACATCACATGCCCACTTTGCAGGACTCCCTTACTGCTTGAAGATGATGCATCATCTTGCTTTTGGTAA 474 0.4283 MGLSSLPAPSEGVLCALLANTAMSISIFKGIVRTILHIVGIHVSSSSTSSPTDVSQNPPESFEFHISPSEGFIEEIKSRTPTLRFDSVCSGCKQEQPEHECSVCLTEFEPESEINHLYCGHLFHKACLEKWLNYWNITCPLCRTPLLLEDDASSCFW. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01298 157 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Seca6g01298 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 147 IPR013083 -
Seca6g01298 157 SMART ringv_2 100 143 IPR011016 GO:0008270
Seca6g01298 157 Pfam Ring finger domain 100 143 IPR001841 -
Seca6g01298 157 PANTHER - 1 151 IPR044249 -
Seca6g01298 157 SUPERFAMILY RING/U-box 94 148 - -
Seca6g01298 157 SMART ring_2 101 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01298 Seca-Chr6 52944625 52945098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01298 1 148 C3H Transcription Factor Family AT2G04240 59.211 9.01e-56 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01298 K16285 - gmx:100786803 231.491