Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01291 ATGACATTTGAGTCTATTGAAAAAGTTAGAGAATTTTATAATTCATTTGCTAAGAAGATGGGTTTTGGAGTACGTGTTCGTTCAACTAAACCAAAGAGAGCAGTCTTGGTTTGTTGCAATGAAGGTCAGCACAAAGTGAAAAGCTCTGGAAATGAAGAAATTCAAGATGGCACAAGTCAAACTAAGAAAAAGTGTTCAACTACTCGAAGTGGTTGTGAAGCTTCACTTATTGTTTCAAGAGGCACAACACAAAGTAGTTGGATTATACAATCTTTTAACAATAATCGTAACCATGTCATGGTTAGCCCTAAGAGTGTGTCTTATATGAGGTGTCACAAAAAGATGACTAAAGCTGCAAAAAGTCTTGTTGAAAAATTTGAGGAAGAAGGCTTACCGACAGGAAAGGTTGCTAAAATTTTCAATGATGGTGACTTAGCATTCTCTAACAGGGATTGTTGGAATCATATCAGAAATTTACGCAGAAAGAATTTAGATGTTGGAGATGCACAAGCTAGATCAAGAGCAGCTTACCAGCAATTTGGAGATGTTATAACTTTTGATACCACTTACAAAACCAACAAGTATAGTATGCCGTTTGCCCCATTTGTTGGACTAAACAATCATTATCAATCAATTTTATTTGGTTGTGCTCTGTTACAAGATGAGTCAGAGAGTTCTTTTCTGTGGTTGTTTGAAACATGGCTTGAGGCAATGGATGGAAAAAGGCCTGTATCTATCCTAACTGATCAGGATTTAGCTATTGGAGCTGCTTTGGCTAAAGTATTTCCAGAAACTCGACATCGCCTTTGCTTATGGCACATTAGAAAAAAGTTTCCTGAAAAGCTAGCTCACATATATCACAAAAAGTCTATTTTCAAGCGTGAGCTGAAAACATGCATTAGAGATTCACCTAGTATCCAGATTTTTGAGGAAAAATGGAAGCACTTAATGATTGAGTATAACTTGGAGGATAATGAATGGCTTCAGGGGCTATATAAGATTAGAGAATCATGGGTGCTAATTTTTAATAGAAGTACATTCTTTGCGGGGATGAATACTACTCAAAGAAGCGAGAGTATTAATGCATTTTTTTATTCTTTTGTAGATGCATCCACAACATTACAAGAATTTGTGTTAAAATTTGAGAATGCAATTGGTAGCCGTTTGGAGGATGAAAGAAAAGAAGATTATGAATCTAGGCATAAATCGCGTATTTTGAGTACTGGATCCAAACTTGAGGAGCATGCTGCATTTATTTACACAAGAAATATGTTTGGTAAATTTCAAGATGAACTTAGGAAGATAAACCAATTTACTAAACAAAAGATTGAAAGAGATGGGCCTAGATATGTGTATCGGGTATCTAATTGTTATGATGCTCATGATACATTCATTGTTGACATAAATTTAGACAAAAAAATTGCTAAATGTGGCTGCCAACTATATGAATTTATGGGGATATTGTGCCGACACATATTAGTAATTTTTCAAGCAAAAGGTGTTGTTCAAATTCCTAGTCATTTCATTTTGCAACGTTGGACAAAGGATGCTAACAAAGGTATCAAGGTCAATTATACCGAAGATAATACTGATGCTCAATCTAACACATCAAGGATTATAAGAAGGATGCATGCACAACAAGAAGCAAGCTTGTTAGTTGATCTTGCTGAGGAGTCTGAAGAGTTATACAAGTTCATTATCTCAGAACTGAGTCACACTCATAAGTCAGTTGTTGCAATTGATGAGACACCTGTTTTCGAGTCAAGCCAAAATATAAACCATACTTGCATATCAGAGCAAGGGAACGAAGCACCACAATTGCCTATTGGAGACCCGCATGTATCAAAAACAAAAGGGAGAAAGAAGGATGGAGAGAAAATGGCTCAAAATTGTAGATTTAAGAGTGGACTTGAAGTATCTCTTAGTAAATCATTAGTTAAAAGGAAATCATGCCATGAGTGTGGGGGACATGGTCACAATAGCAGAACTTACAAGAAAAGAAATCAAAATAATTAA 2016 0.3562 MTFESIEKVREFYNSFAKKMGFGVRVRSTKPKRAVLVCCNEGQHKVKSSGNEEIQDGTSQTKKKCSTTRSGCEASLIVSRGTTQSSWIIQSFNNNRNHVMVSPKSVSYMRCHKKMTKAAKSLVEKFEEEGLPTGKVAKIFNDGDLAFSNRDCWNHIRNLRRKNLDVGDAQARSRAAYQQFGDVITFDTTYKTNKYSMPFAPFVGLNNHYQSILFGCALLQDESESSFLWLFETWLEAMDGKRPVSILTDQDLAIGAALAKVFPETRHRLCLWHIRKKFPEKLAHIYHKKSIFKRELKTCIRDSPSIQIFEEKWKHLMIEYNLEDNEWLQGLYKIRESWVLIFNRSTFFAGMNTTQRSESINAFFYSFVDASTTLQEFVLKFENAIGSRLEDERKEDYESRHKSRILSTGSKLEEHAAFIYTRNMFGKFQDELRKINQFTKQKIERDGPRYVYRVSNCYDAHDTFIVDINLDKKIAKCGCQLYEFMGILCRHILVIFQAKGVVQIPSHFILQRWTKDANKGIKVNYTEDNTDAQSNTSRIIRRMHAQQEASLLVDLAEESEELYKFIISELSHTHKSVVAIDETPVFESSQNINHTCISEQGNEAPQLPIGDPHVSKTKGRKKDGEKMAQNCRFKSGLEVSLSKSLVKRKSCHECGGHGHNSRTYKKRNQNN. 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01291 671 SMART 26again6 475 502 IPR006564 GO:0008270
Seca6g01291 671 Pfam MULE transposase domain 183 277 IPR018289 -
Seca6g01291 671 ProSiteProfiles Zinc finger SWIM-type profile. 464 500 IPR007527 GO:0008270
Seca6g01291 671 MobiDBLite consensus disorder prediction 652 671 - -
Seca6g01291 671 Pfam FAR1 DNA-binding domain 11 101 IPR004330 -
Seca6g01291 671 Pfam SWIM zinc finger 468 499 IPR007527 GO:0008270
Seca6g01291 671 MobiDBLite consensus disorder prediction 600 627 - -
Seca6g01291 671 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 578 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01291 Seca-Chr6 52681699 52683840 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g01291 MULE 3.4e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01291 - - mtr:112420114 990.719