Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01278 ATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAATACAACCAACACTTATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGTCTTTCTTGTCATGGGGTATACTTCATTTTTATCACTAACGAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAATGCACTGGGATCCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAAACAGAACTGAGAATATTACTTTCTAGTACACTGTTTCAGAATTATTTTTGTGAATACTTCAACACACTTTGCCTGGCAAGGCCAAAGTTTGTCCAAGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAAAATCCAGAGAAAACACAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTACTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAATTGGTTTTGTAGATGTTTATGAGAGTGGGAAGTCTGACAAGCTTCCTGGTTTGCAAATTTATGCTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAGAAACTGCAAAAGAAAATGGTTGGGTCCAGTGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATGCATCCATGGTTGATCAAAACAGCAACAAGTGCGGATAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAATTCAAGTATGATTTCAGGGTATGGTCAAAAGTGAGATTTATTTTGAGCCTTATCTTTCGTGTTGTCAAGGAGGATAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAGTTGTTTGAGGAGTTCTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGAAAAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGATTGATATTTTTGGACTCGGAGTGGAATCCGTCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAA 1305 0.3877 MHDHQKKGFQFIWQNIAGSIQPTLMEVESERRGGCVISHTPGAGKTFLVIVFLVMGYTSFLSLTRENSKYEHKKYMAKALRECTGILILDEGHNPRSTKSRLRKGLMKVETELRILLSSTLFQNYFCEYFNTLCLARPKFVQEVLKELDIKQKKGNDKNPEKTQHLLETRARKFFLDDITNKIDSSDDEVRMQGLNMLRKITIGFVDVYESGKSDKLPGLQIYALLMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSMHPWLIKTATSADKFYTSQELNQLEKFKYDFRVWSKVRFILSLIFRVVKEDKVLIFCRNLAPMKLLVQLFEEFFKWKKDGEILLLYGEKDLFERGKVIDKFEDPCGVSKVLLASITACAEGISLTAASRLIFLDSEWNPSKIKQAIARAFSSWPGKDGLCVSTLGKRLNGGR. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01278 434 Gene3D - 86 217 IPR038718 -
Seca6g01278 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 422 IPR027417 -
Seca6g01278 434 Gene3D - 218 412 IPR027417 -
Seca6g01278 434 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 54 IPR044567 GO:0080188
Seca6g01278 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 141 IPR027417 -
Seca6g01278 434 Pfam Helicase conserved C-terminal domain 298 411 IPR001650 -
Seca6g01278 434 Pfam SNF2-related domain 62 241 IPR000330 GO:0005524|GO:0140658
Seca6g01278 434 CDD SF2_C_SNF 290 412 - -
Seca6g01278 434 Gene3D - 1 73 IPR038718 -
Seca6g01278 434 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 301 434 IPR001650 -
Seca6g01278 434 SMART helicmild6 326 412 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01278 Seca-Chr6 52247016 52248579 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01278 344 410 RAD5 or RAD16-like Gene Family AT5G05130 44.118 6.79e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01278 K10875 - gmx:100781856 498.434