Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01260 ATGCATTTGGTTAAAGAGGAGAAGAATTGTAGGATTTTTCACTTAGGTTTGGAGAGTAATAGTCAAGAATCTGGATTGTCCATTGAATTATGTTGTTCCTACAAGGACGATTTAGTCGTTGTTCATAAGAATTGTGCAGAGGTTTGGTTCAACATAAGGGGAATAGATGAATGTATAAACTTATTTTTCTTGATTTCAATTGCAGAACTTTGTTTTTATGCTAAATTTTCATAG 234 0.3205 MHLVKEEKNCRIFHLGLESNSQESGLSIELCCSYKDDLVVVHKNCAEVWFNIRGIDECINLFFLISIAELCFYAKFS. 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01260 77 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 72 IPR013083 -
Seca6g01260 77 PANTHER ZINC FINGER, RING-CH-TYPE 6 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01260 Seca-Chr6 50714891 50715124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01260 1 54 C3H Transcription Factor Family AT5G05830 51.852 5.56e-15 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01260 - - hsyr:120146923 86.6557