Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01250 ATGGCCCAGTTAGTTTGTGGAGGCTGCCATACTCTACTCATGTACATCCGTGGAGCGACAAGTGTGCAATGCTCCTGTTGTCACACTGTCAATCTAGCTTTGGAAGGTATTGAACTATTAATGGTCTCATGA 132 0.4545 MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGIELLMVS. 44
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01250 43 PANTHER PROTEIN LSD1 1 39 IPR040319 -
Seca6g01250 43 Pfam LSD1 zinc finger 6 30 IPR005735 -
Seca6g01250 43 NCBIfam zinc finger domain, LSD1 subclass 3 32 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01250 Seca-Chr6 50584180 50584311 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Seca6g01250 zf-LSD1 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01250 - - lper:127322611 81.2629