Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01249 ATGGATCGGGAATGGGGTTCGAAGCCCGGGAGCGGTGGCGCCGCCTCGGCTCAGAACGAAGCCATCGACCGTCGAGAGCGTCTCCGGCGACTGGCCCTCGAGACCATTGATCTCGCCAAAGATCCCTATTTCATGCGCAATCATCTTGGAAGCTACGAATGCAAACTCTGCCTCACTCTTCACAACAACGAGGGCAACTACTTGGCCCACACGCAGGGCAAGCGCCATCAGACCAATTTAGCCAAACGTGCAGCTCGCGAGGCCAAAGACGCTCCCGCTCAACCTCAACCTCACAAGCGCAAAGTCTCCGTTCGCAAAACAGTCAAGATTGGTCGGCCTGGCTACCGGGTGACTAAGCAATATGATCCAGAGACAAAGCAAAGATCTCTTCTGTTTCAGATTGAATATCCTGAGATTGAAGACAATATGAAGCCAAGGCACCGATTCATGTCTTCTTATGAGCAGAGGGTGCAACCATTTGATAAAAGATATCAGTATCTTTTATTTGCTGCGGAACCATATGAAATAGTTGCATTCAAGGTACCTAGCACAGAGATTGACAAGTCAACTCCAAAGTTTTTCTCACACTGGGACCCAGACTCAAAGATGTTCACACTGCAGTTGTATTTTAAATCCAAGCCACCAGAGGCAACCAAACCACAGCCTGCCTCTACAGCCAATGGTGCAGCAGCACCAGGTGTTCCACCAAGGCCTTTGCCGCCGCCACCCCAAGCTCCACCACCACCACCTCCTCCACCACAAGGGCTACCTCCTGGTGCACCTCCTCCCAGAGCTCTTCCACCTCCATTACCAGGATCGTTGCCACCTCCACCTCCCATGGGAGTAAATGGTCCTAGACCCGCACCTCCTGGTGGAATGCCATCTATCCCACCCCCACCCCCTCTTGGCAGTGGCACAGCAAGTTTCAACATGGGTTCAAGGCCTCCATTAATGCCACCTCCGCAAGGTCCTCAGTGA 978 0.5297 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDNMKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIVAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPPEATKPQPASTANGAAAPGVPPRPLPPPPQAPPPPPPPPQGLPPGAPPPRALPPPLPGSLPPPPPMGVNGPRPAPPGGMPSIPPPPPLGSGTASFNMGSRPPLMPPPQGPQ. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01249 325 Gene3D - 93 218 - -
Seca6g01249 325 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Seca6g01249 325 MobiDBLite consensus disorder prediction 213 325 - -
Seca6g01249 325 FunFam Splicing factor 3a subunit 2 94 218 - -
Seca6g01249 325 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Seca6g01249 325 MobiDBLite consensus disorder prediction 1 21 - -
Seca6g01249 325 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Seca6g01249 325 MobiDBLite consensus disorder prediction 233 304 - -
Seca6g01249 325 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 315 - -
Seca6g01249 325 Pfam Zinc-finger of C2H2 type 52 76 - -
Seca6g01249 325 SMART CactinC_cactus_3 89 217 - -
Seca6g01249 325 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Seca6g01249 325 Gene3D Classic Zinc Finger 46 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01249 Seca-Chr6 50561024 50565099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01249 1 228 C2H2 Transcription Factor Family AT2G32600 89.912 1.48e-145 409