Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01244 ATGATCGCAAAACAAGCTTTATCAAGCTTTTTGGATAATAAAAGCCAAACGGTGCGTAAAGATGAGAAAGAGCCCCTTCCTGAACCGGCATTCCCTGAACGCACTAACCCGGTTCAAGATTCCCTGAACCGAGATGAGCCGAATGTTTCGCAAACGCGTGAAACCGGAGGTACGGAAAGAAAAGAATGCTTTGAAACAGCGCGGAAGGAGAAAGGAAAGGTTTCTGCGACGGGTAGTTCTGTGAGCGAAACTAAAGATTCCAGTTCTGTTGCGAAGAAAGGCCATGCCAAACGAAAGGTTGAAGAGAAAGTTGCTTCTGTGAAAAAATCGTTGTTACCGGAGCATAACAATGGTGATGTAGATGAGGAAGTTACCAGCTCCAGAACTTCAATACAATCACAGAGGTCGCCTAAGCAAGTCATGAAGCGGACTTCGCTGACTGGAAAGCGTAAGAGATTGCATTGGACTGCTGAAGAAGAAAACGCTCTCAAGGAAGGAGTGTTAAAGTTCTCAACGGGAAATCAGAATATCCCTTGGAGGAAAATTTTAGAATTTGGTTGTCGTGTATTTGATAAGACTCGTACTCCTGTTGATCTTAAGGATAAATGGAAGAACATTATCTCCAAGGAAGGATGCAAGTAG 642 0.4377 MIAKQALSSFLDNKSQTVRKDEKEPLPEPAFPERTNPVQDSLNRDEPNVSQTRETGGTERKECFETARKEKGKVSATGSSVSETKDSSSVAKKGHAKRKVEEKVASVKKSLLPEHNNGDVDEEVTSSRTSIQSQRSPKQVMKRTSLTGKRKRLHWTAEEENALKEGVLKFSTGNQNIPWRKILEFGCRVFDKTRTPVDLKDKWKNIISKEGCK. 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01244 213 MobiDBLite consensus disorder prediction 36 54 - -
Seca6g01244 213 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 18 210 - -
Seca6g01244 213 Pfam Myb-like DNA-binding domain 154 206 IPR001005 -
Seca6g01244 213 MobiDBLite consensus disorder prediction 73 87 - -
Seca6g01244 213 CDD SANT_TRF 155 207 - -
Seca6g01244 213 MobiDBLite consensus disorder prediction 123 143 - -
Seca6g01244 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 147 211 IPR017930 -
Seca6g01244 213 SMART sant 151 209 IPR001005 -
Seca6g01244 213 MobiDBLite consensus disorder prediction 55 72 - -
Seca6g01244 213 MobiDBLite consensus disorder prediction 15 29 - -
Seca6g01244 213 MobiDBLite consensus disorder prediction 88 122 - -
Seca6g01244 213 ProSiteProfiles Myb-like domain profile. 147 207 IPR001005 -
Seca6g01244 213 SUPERFAMILY Homeodomain-like 150 207 IPR009057 -
Seca6g01244 213 MobiDBLite consensus disorder prediction 1 151 - -
Seca6g01244 213 Gene3D - 143 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01244 Seca-Chr6 50417091 50421725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01244 152 206 Single Myb Histone (SMH) Gene Family AT3G49850 53.571 3.89e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca6g01244 Myb_DNA-binding 4.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01244 - - mtr:11429054 193.741