Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01227 ATGTTAAAATCTGTGGAACTCCCAGATTGTTTCTATCCTAGGCCACCAATGACCATCCTCCCAAGTGCTCCAACACCAAAGCATTCTATCTCTCTCTCTAGTTTTGACAACCAAGAGTTCATAAGGTTGCCAGTCCAGTATATGTTTATCTTCAAGAAATCTGTGAGCTTTGATATCTTGAAGTCTGCTCTGTCCAAAGTTCTGGTGCATTACTACCCATTAGCTGGGAGATTGAAGACAAGCATTGAGGATGATCACAAGCTTACGGTGGATTGCAATGGAGAAGGTGCTGTGTTTGCTGAGGCTTACATGGATGTCACTGCTGAAGAATTACTCAAATCTTCCGATATGCATAACAAGTCTTGGAGGAAGCTCTTGTGTGAGGTTGAAGCTCAAAGTTTCTTAGATTTTCCTCCTCTTGTAATCCAGGCAACAGGTCTTCGTTGCGGAGGAATGATCTTGTGCACCGCGATCAACCACAACCTATGCGATGGCATCGGTGCCTCACAGTTTATACATGCTTGGGCCCAACTCACCAAGCAACCCAATAATGACTTGACAATAATACCCTTTCACGGGAGACACGTGTTAAAAAGTCGAGATCCCCCACAAGTAAAGTTCCCTCACCCGGGATACACTAGAACAAAGCCCTCTAATCAAGTGCACATGTTCGAGTGGATACTCTCCCAACCCTTAGTTGCCACGTCATTCACCTTTGGACCCACCGAAGTGCTTGGCCTGAAGAAGCAATGCGAGTCATCGCTGAAGCGCATCACCACCTTTGAAGCGGTGGCTGCACACACGTGGCGCTCATGGGTTCGATCACTAAACCTGTCCTCCACTCTCGTTGCGAAGCTCCTTTTTGCGGTCAATGTTAGGAAAAAGATGAAGCTCCCAGAAGGGTATTATGGGAACGGTGTTGTTCTAGCATGTGCTGAGAGCCCAGTGCAGGCCTTGCTTGCTACTAATAACCTGCGCCATGGTTTGAAACTTGTACAAGAAGCCAAGGCTATTTTAGACGATGATGAGTACATAAGGTCCACCATTGATTTGGTGGAGGATAAGAGGGTTGGGCCTGATTTTTCAACAGGCTTGGTTATATCACAATGGTCAAGGCTAGGGATGGAAGAAGCGGATTTTGGAGAAGGGAAACCATTATATATGGGTCCTTTAACAAGTTATGTTTACTGCTTGATTTTACCAGTTGTTGGAGATGCAAATGCGGTGAAGGTGCTTATGTCGCTACCGGAGAGTATCGTAGAAAGCTTTCAGCATCACATAATGAAGACTGAGAGTTGGGATTAG 1305 0.4575 MLKSVELPDCFYPRPPMTILPSAPTPKHSISLSSFDNQEFIRLPVQYMFIFKKSVSFDILKSALSKVLVHYYPLAGRLKTSIEDDHKLTVDCNGEGAVFAEAYMDVTAEELLKSSDMHNKSWRKLLCEVEAQSFLDFPPLVIQATGLRCGGMILCTAINHNLCDGIGASQFIHAWAQLTKQPNNDLTIIPFHGRHVLKSRDPPQVKFPHPGYTRTKPSNQVHMFEWILSQPLVATSFTFGPTEVLGLKKQCESSLKRITTFEAVAAHTWRSWVRSLNLSSTLVAKLLFAVNVRKKMKLPEGYYGNGVVLACAESPVQALLATNNLRHGLKLVQEAKAILDDDEYIRSTIDLVEDKRVGPDFSTGLVISQWSRLGMEEADFGEGKPLYMGPLTSYVYCLILPVVGDANAVKVLMSLPESIVESFQHHIMKTESWD. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01227 434 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 19 417 - -
Seca6g01227 434 Gene3D - 15 214 IPR023213 -
Seca6g01227 434 Pfam Transferase family 18 427 - -
Seca6g01227 434 Gene3D - 215 428 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01227 Seca-Chr6 48760209 48763957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01227 59 429 Monolignol Biosynthesis Gene Families AT5G48930 30.179 8.38e-47 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01227 - - gmx:100797134 605.52