Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01204 ATGGAAAAGGCAGGTGCTGAACTTCAAAGTGATGCAGCTTCAATGGTGTCAGATCCTGCTCTTATTCATCATCAGACATGTTCTGGAAATGGAAAAGATGACCAGACATCCTTGATTCCACAGTCAAGAAGACCTAGCCTCTCCTCTCTGCAAATACCAACAAGGTCACTAGAAAGTGCATTATCTTCTTCTAGCAAGACAGATGGTCCTACATTGTCAAGTCCAGGTTCCACTAGAGGACTTCCCCCAAGGCCAAATTCTGCCAAAGTCAAGTCCTCTATGAGAAATTTACTTTCTGAGAGAAGTTTTAGGACTAAAACTTATTCACAAGATTGTGAAAGGACAGTTCTGATTGTTCCTGATACTTTACCATCAGATGGTCCTCTGGATAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAATAAAATATTGTTCCCTTCATCAACAAAAGCAGCACATTCATTACCGGTTACTCCAATTGCAAATTCAGATGGAGAGACTCTACATGGAAGACATCTAGGGAGTGATTCTGATTTAAGTAAAATGAAAATAAATCAACATATGACTCGATCCTTTTCAGTTCCAGTTAATGTCAAAGCCAGTAATTCAAGGCCAAAAGATTCTAGGCGCCTGATTCGTGTAATTTCAGCAAGATCACATCTAGCGACTATTGATGACAATTCAACTCACAATGCTTCGGCGTCAGAGATTGTCATTGAAGATGATTCTGAGGATATTCCAGAGGAAGAAGCAGTCTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAAAACTCTTAGGATGGAGTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTTAAGTGGTTTAGTATCAAAGGAAATAGGACCTGTGATGTCTGCAAGGAGGATGTCCGAAACCTTCCAGTAACACTCTTGAAAATTTCTAATCCTCTAACTGTTGCTCGGCAGCCAATGAATGCACCACAGCAGAGAGAAGTAACACATTACAGGTTATTTATGAATTTCAATGTCACGCAATTATCAGGAGAAATGCTTTCTTAG 1062 0.4096 MEKAGAELQSDAASMVSDPALIHHQTCSGNGKDDQTSLIPQSRRPSLSSLQIPTRSLESALSSSSKTDGPTLSSPGSTRGLPPRPNSAKVKSSMRNLLSERSFRTKTYSQDCERTVLIVPDTLPSDGPLDKPSTSRSLSLNKILFPSSTKAAHSLPVTPIANSDGETLHGRHLGSDSDLSKMKINQHMTRSFSVPVNVKASNSRPKDSRRLIRVISARSHLATIDDNSTHNASASEIVIEDDSEDIPEEEAVCRICLVELGEGGKTLRMECSCKGELALAHQDCAVKWFSIKGNRTCDVCKEDVRNLPVTLLKISNPLTVARQPMNAPQQREVTHYRLFMNFNVTQLSGEMLS. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01204 353 SMART ringv_2 252 301 IPR011016 GO:0008270
Seca6g01204 353 PANTHER OS02G0165000 PROTEIN 24 344 - -
Seca6g01204 353 CDD RING_CH-C4HC3_MARCH 253 301 - -
Seca6g01204 353 SUPERFAMILY RING/U-box 249 303 - -
Seca6g01204 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 308 IPR013083 -
Seca6g01204 353 ProSiteProfiles Zinc finger RING-CH-type profile. 245 307 IPR011016 GO:0008270
Seca6g01204 353 MobiDBLite consensus disorder prediction 1 96 - -
Seca6g01204 353 Pfam RING-variant domain 253 300 IPR011016 GO:0008270
Seca6g01204 353 MobiDBLite consensus disorder prediction 21 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01204 Seca-Chr6 47654689 47657396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01204 239 307 C3H Transcription Factor Family AT2G37950 45.833 2.14e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01204 - - gmx:100779396 471.47