Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01150 ATGGCCCCTTCTTCTCTGAGTATTGCTGATTCACAGTATCGGTCAACAGCACCCGAAGTTGCAGAGAACGATCTTCAGCCATTTTTTGTTCTTCATAAAGCTTCATCCCGAAGAAAAGATAGAACATCAACAGAACAGGGAAAATTGCGCAAGAGAAATGAGCTATCTCCATCATCACCACCACAAAGTGCAAAGAAACTGGCAGGAAGTACAACTGAAGAATGTGATCGCCATTTGTTTCAGAAACTACAGATTGAAACTTTTGAAATTGTTTGGGCAAAGATTGAATCTACCATTAAGGACGTTTTGAGAGATCTCAATGCTAGTGTATTTAATGATATACAACAATGGGTTCTGGAGTGCTTCAATGCTACAAGATTGCTTGGAGAACCAAGTATTGCTGAAGCAACTAGGTCTTTTCCTATTCTTAATGACACTACTCCCGGGCACCTGTTCACTGCATTGGTCATTACCAGAAACATAGAATTTGTTGATGATATATGGACATTTGAAGAGCTCGGAGATTTCTTGAAATCCCGTGGATGCCACGTGGCTATGCTCTCATCACTGGAGTTTTCATTAAAAAATGGAATTGCTGGTTGCCTGAAAGCTTTATTGCGAGAGCTTCTAGGGGATGCTATCGACTCGGCTGATATATCAATATTGGCATCATGGTATAGAGAACAAGACAACTACAATAAACCACTAGTGCTGATCATTAATGATTTAGAAAGATGTTGCGGATCAGTCTTAACGGATTTTATCCTGATGTTGAGTGAATGGGTTGTCAAGGTGCCAATCATCTTAATATTTGGAGTTGCAACGACAGTGGACACCCCAAGAAACATTTTGCCATCATATGCTCTCGGGCATTTGTGTCCTTCTAAGTTTATGCTTCGAACGCCAGCTGAGAGAATGGATGCAATTGTTGAGGCTGTTCTTGTGAAGCATTGCACTACATTTAATATTGGTCATAAAGTGGCACTCTTCCTCAGAAACTACTTCATCAACCAGGATGGGACAGTAACATCTTTTATAAGAGCTTTGAAGGTAGCATGCTTACTATATTTCTCTATGGAACCTCTGAGTCTCATACATGGGCAAATACTCGCTGAAGACCAAAAGGAGGGAAAATCTACATTATCACCTGAGACTATGTTGAAATACATGGATAAACTTCCATACCATGCAAGGAATCAAATGGTTGATCAGACCAGAAAAAGCATGGCAGAGGGTTTGTCAGAATTGGTGACAGTGCAGAAGCTATGGAGCACTGTGGTTCTCGTAAGATTTAGGAATTGCTTTTAA 1308 0.4044 MAPSSLSIADSQYRSTAPEVAENDLQPFFVLHKASSRRKDRTSTEQGKLRKRNELSPSSPPQSAKKLAGSTTEECDRHLFQKLQIETFEIVWAKIESTIKDVLRDLNASVFNDIQQWVLECFNATRLLGEPSIAEATRSFPILNDTTPGHLFTALVITRNIEFVDDIWTFEELGDFLKSRGCHVAMLSSLEFSLKNGIAGCLKALLRELLGDAIDSADISILASWYREQDNYNKPLVLIINDLERCCGSVLTDFILMLSEWVVKVPIILIFGVATTVDTPRNILPSYALGHLCPSKFMLRTPAERMDAIVEAVLVKHCTTFNIGHKVALFLRNYFINQDGTVTSFIRALKVACLLYFSMEPLSLIHGQILAEDQKEGKSTLSPETMLKYMDKLPYHARNQMVDQTRKSMAEGLSELVTVQKLWSTVVLVRFRNCF. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01150 435 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 3 21 428 IPR020795 GO:0003677|GO:0005664|GO:0006260
Seca6g01150 435 MobiDBLite consensus disorder prediction 53 69 - -
Seca6g01150 435 CDD Orc3 86 365 - -
Seca6g01150 435 MobiDBLite consensus disorder prediction 33 52 - -
Seca6g01150 435 MobiDBLite consensus disorder prediction 32 70 - -
Seca6g01150 435 Pfam Origin recognition complex (ORC) subunit 3 N-terminus 75 364 IPR045667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01150 Seca-Chr6 44498988 44509430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01150 1 431 Core DNA Replication Machinery Family AT5G16690 47.608 2.85e-132 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01150 K02605 - gmx:100780646 687.182