Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01144 ATGATGAGCAGTGGAAGCGGAAGCGGAGGGATCAACTGTCAAGATTGCGGGAACCAAGCGAAGAAGGATTTCCCTCACATGCGATGCAGGACTTGCTACAAGAGTTATGGATTCGATTGTCAAACTCATGCGAAGAGCACTTGGGTTCCTAATGCAAGGCGCCGCGAAAGACAACAGCAACAAGTGGCTAGTGGTAGTGGTGGACATGTTCCGGAAAGGCAGAGAGATCATAACCAGAGCTCTTCATCCCTCGTCTGCACTCGTTTGCCTACTACAAACCACACTATCGTTCATTATAGAGGTTTCAAACCGGTGACGACGTCGATTGCGAACACAAGCAACTTTATGATAACAAACGATTGGAAAGATGAAATTATTGGTCAGATTGAAGAAGATTGGGGACGAAGATGTTTAATTATTATAGATTTTGAGGATTTGCTTGCAAATTTTACAACTTATTTAAAAAGGAATATTCTAGCGAGATTCCTATTTTCCCATTGCTACACAGTGAACTATCTATTTTACTACTTCACCTTAGAATTCGCCTTTGTTTTGTGTGTTTTTTGTCATTCTTTAAGTGCATGA 585 0.4154 MMSSGSGSGGINCQDCGNQAKKDFPHMRCRTCYKSYGFDCQTHAKSTWVPNARRRERQQQQVASGSGGHVPERQRDHNQSSSSLVCTRLPTTNHTIVHYRGFKPVTTSIANTSNFMITNDWKDEIIGQIEEDWGRRCLIIIDFEDLLANFTTYLKRNILARFLFSHCYTVNYLFYYFTLEFAFVLCVFCHSLSA. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01144 194 Pfam Domain of unknown function (DUF702) 10 78 - -
Seca6g01144 194 MobiDBLite consensus disorder prediction 51 83 - -
Seca6g01144 194 MobiDBLite consensus disorder prediction 51 67 - -
Seca6g01144 194 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 4 92 IPR007818 GO:0003700|GO:0006355
Seca6g01144 194 NCBIfam putative zinc finger domain, LRP1 type 12 54 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01144 Seca-Chr6 44010608 44011192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01144 13 110 C2H2 Transcription Factor Family AT5G66350 54.369 2.56e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca6g01144 DUF702 6.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01144 - - dzi:111300075 122.094