Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01143 ATGGAGAAAGTGCCTGAGATTGAAGAAACTGCTGAGCCACCAGCTTTACCTCCACCACCTCCTGATGTGCTGCCTAATATGGAAACAGAACAAATGGCTCCTACAAAGTATTCTATTATCAGTAGGCTGGGGGTTGGGACCACAGGAAAATGCGTACCTTTGCTTGCTAATCTCTTCAAAGTTGCTTCTAATGCTCCTGATGCAATTTTTTTCCAGTATAGTGTTACTATTACTTCAGAAGATAAAAGAACTGTTGAAAGCAAGGGCATTAGGAGAAAAGTGATTGAATGGCTTTATCAAATGTACTCTTCTGAACTTGGTGGTAAAAGGTTTGCATATGATGGAGAGAAAACTTTGTACACAGTGGGTCCTCTTCCGCAAAATAAATTTGAGTACAAAATATTGCTTGAGGAATCATTTGCAAAGTGGCTTATACTGTCTTCCTACCCTAGCAGTAGTGCTCAGAACCCTGGTGCTAATGGAAGCCCTCGCGAGGAAACTAAAAGGTTAAAACGTTCTTTTCAGTCAAAGGCATTCATGGTGGAGATAAGTTTTGCTGCTAAAATACCCCTCCAGTCTGTTGCTCTTTCCCTCAAAGGGATTGAGTCAGATGCCAATTGTCAGGATGCTTTGAGAGTGCTTGATATTGTACTGAGGCAGCAGGCAGCTAACAGAGGGTGTCTCTTGGTAAGGCAATCTTTTTTTCATGATGACCCGGGTAATTTCACTGATATTGGAGGTGGAGTAGCAGGAGTTCAGGGTTTACATTCCAGTTTTCGCCTTACAGAGGGAGGATTTTCTCTCAATATGGATGTGTCCACAACGGTGATCTTAAAACCTGGACCTGTAATTGATTTTCTCCTTTCCAACCAGAATGTGAGGGAACCCCGTTATATTGACTGGGCGAAGGCCAAAAAAGTGCTTAAAAATTTAAGGGTGCTTGCAACACATCGTAACCGGGAATTTAAAATTTCTGGCTTGAGCGAGAAACCCTGCATTCAGCAACTTTTTAGTATGAAGGTGAAAAGTGGAAACAACAACAGTGGCGAGCAGACAGTGGATATTACTGTATATGAGTATTTTGCTAAACACTGTGGCATAGAGCTGACCTCTTCTGCTTATCTTCCATGTCTTGATGTTGGGAAGCCAAATCGGCCCAACTATCTGCCCTTGGAGCTTTGTTCACTTGTTTCCCTCCAGCGCTACACCAAGGCATTATCTCCAATGCAAAGAGCATCTTTAATGGAAAAATCACGCCAAAAGCCACAGGATAGAATAAAAATTCTGACAAATGCTGTAGGAAATTATTGCTACGATGATGACCCTGTTCTTGGTGCATGTGGCATTTCTGTTGATAAGCAATTGACTCCGGTTGAAGGTCGGGTTCTTGAGACACCAAAGTTGAAGATTGGCAAGAATGAGGACTGCTTTCCCCATAATGGAAGGTGGAGCTTTAATAAAAAGACACTTCTTAAACCATCACATATTGATTTTTGGGCTGTTGTCAACTTTTCTGCACGTTGTGATACTAGTTACATAACAAGGGAGCTGATCAAATGTGGAATGAGCAAGGGCATTAACATTGAACGGCCATATACTTTAATAGAGGAAGAACCACAGTTGAGAAGATCTAACCCTGTTGCAAGGGTTGAAAAGATGTTTGACCTGCTTATATCAAAACTTACTAAAGAACCAAAGTTGATTCTCTGTGTCTTGCCTGAGAGGAAAAATTGTGACATTTACGGGCCTTGGAAAAAGAAGTGTCTGAGTGAATTTGGTGTTGTCACACAGTGTATTTCCCCTCTCAAGATCACTGATCAATACCTTACTAATGTACTTCTTAAAATCAATTCTAAGCTGGGAGGTATAAATTCTCTGCTGACAATAGAGCATTCTGGGAAACTTCCCCTGATTAAAGATACCCCAACAATGATTTTGGGGATGGATGTTTCTCATGGTTCCCCTGGTCAGTTAGATATTCCATCAATAGCAGCGGTTGTCGGATCTCGGCGTTGGCCTCTGATTTCAAGGTATAGAGCATCTGTGAGAACACAATCATCCAAGGTGGAGATAATTGATGCTCTATACAAGCCTTTGGATAATGGGAATGATGATGGTATTATCAGGTTCGATAAAAATGTATATTGGATTATTGCTGTTTTGTATTTAACTATTTGTTAG 2181 0.4113 MEKVPEIEETAEPPALPPPPPDVLPNMETEQMAPTKYSIISRLGVGTTGKCVPLLANLFKVASNAPDAIFFQYSVTITSEDKRTVESKGIRRKVIEWLYQMYSSELGGKRFAYDGEKTLYTVGPLPQNKFEYKILLEESFAKWLILSSYPSSSAQNPGANGSPREETKRLKRSFQSKAFMVEISFAAKIPLQSVALSLKGIESDANCQDALRVLDIVLRQQAANRGCLLVRQSFFHDDPGNFTDIGGGVAGVQGLHSSFRLTEGGFSLNMDVSTTVILKPGPVIDFLLSNQNVREPRYIDWAKAKKVLKNLRVLATHRNREFKISGLSEKPCIQQLFSMKVKSGNNNSGEQTVDITVYEYFAKHCGIELTSSAYLPCLDVGKPNRPNYLPLELCSLVSLQRYTKALSPMQRASLMEKSRQKPQDRIKILTNAVGNYCYDDDPVLGACGISVDKQLTPVEGRVLETPKLKIGKNEDCFPHNGRWSFNKKTLLKPSHIDFWAVVNFSARCDTSYITRELIKCGMSKGINIERPYTLIEEEPQLRRSNPVARVEKMFDLLISKLTKEPKLILCVLPERKNCDIYGPWKKKCLSEFGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLTIEHSGKLPLIKDTPTMILGMDVSHGSPGQLDIPSIAAVVGSRRWPLISRYRASVRTQSSKVEIIDALYKPLDNGNDDGIIRFDKNVYWIIAVLYLTIC. 727
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01143 726 ProSiteProfiles PAZ domain profile. 305 398 IPR003100 GO:0005515
Seca6g01143 726 MobiDBLite consensus disorder prediction 1 27 - -
Seca6g01143 726 SUPERFAMILY Ribonuclease H-like 559 697 IPR012337 -
Seca6g01143 726 FunFam Protein argonaute 7 275 402 - -
Seca6g01143 726 SMART Piwi_a_2 567 725 IPR003165 GO:0003676
Seca6g01143 726 Gene3D paz domain 274 402 - -
Seca6g01143 726 SUPERFAMILY PAZ domain 275 438 IPR036085 GO:0005515
Seca6g01143 726 SMART DUF1785_2 228 280 IPR014811 -
Seca6g01143 726 Pfam Argonaute linker 2 domain 425 469 IPR032472 -
Seca6g01143 726 CDD PAZ_argonaute_like 280 397 - -
Seca6g01143 726 ProSiteProfiles Piwi domain profile. 567 686 IPR003165 GO:0003676
Seca6g01143 726 Pfam Argonaute linker 1 domain 230 277 IPR014811 -
Seca6g01143 726 SMART PAZ_2_a_3 281 420 IPR003100 GO:0005515
Seca6g01143 726 MobiDBLite consensus disorder prediction 11 25 - -
Seca6g01143 726 Pfam PAZ domain 284 414 IPR003100 GO:0005515
Seca6g01143 726 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 32 695 - -
Seca6g01143 726 Pfam N-terminal domain of argonaute 52 218 IPR032474 -
Seca6g01143 726 Gene3D - 462 628 - -
Seca6g01143 726 Gene3D - 634 709 IPR036397 GO:0003676
Seca6g01143 726 Pfam Piwi domain 567 695 IPR003165 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca6g01143 Seca-Chr6 44002555 44006232 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01143 2 697 Eukaryotic Initiation Factors Gene Family AT1G48410 33.601 2.73e-102 335
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01143 K11593 - gmx:100778875 1110.13