Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01142 ATGGACAAAGTGTGTGAGCCGAAGTGGCTTGAGGATTTTCTGAGGAAAACATATTTTGACACATGTACAACTCATCGTTTACATAGAAATGAGTTAAGCCAATACTGTATAAACTGTAATCTGGCAGTTTGCAAACACTGTTCATCACCAGAAACTCACCACCAACACCAGATACTGAAAATTTATAGATATAGTTCAAAGGAGGTTGTCCCTCTTGATGCTATTCAAAAGCACATTGACTGCTCACAAATTCAGCTCTTCATATGCAATACAAAATGGGTTATTTCTTTGAAGCCTCTTCCACACAAAGGTTTAGAAAAAGGGAATGAGGATTCATCATGTAAAATTTGTAATAGAAGGCTGGTTGGGTCTGATTCATATCGTTACTGCTCCATTACTTGCAAGTTTCTAACTATTTTGTACAAACTTTCTCAGGTTGAAGCTGTTTTAAGGAAGCCTGATGATTCAGCTGCTCCCTTCATTTCCCTCCAGGGTCTTTGTCAAATAAAAAGGGAGGAAACTACTGAACCCCCAAAGCGGCGTAACAAAAGAAAGGGAACACCCTATAGAGCTCCTTTGTTCTGA 585 0.3897 MDKVCEPKWLEDFLRKTYFDTCTTHRLHRNELSQYCINCNLAVCKHCSSPETHHQHQILKIYRYSSKEVVPLDAIQKHIDCSQIQLFICNTKWVISLKPLPHKGLEKGNEDSSCKICNRRLVGSDSYRYCSITCKFLTILYKLSQVEAVLRKPDDSAAPFISLQGLCQIKREETTEPPKRRNKRKGTPYRAPLF. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01142 194 Pfam PLATZ transcription factor 63 135 IPR006734 -
Seca6g01142 194 SUPERFAMILY B-box zinc-binding domain 14 62 - -
Seca6g01142 194 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 6 193 - -
Seca6g01142 194 MobiDBLite consensus disorder prediction 174 194 - -
Seca6g01142 194 ProSiteProfiles Zinc finger B-box type profile. 22 61 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01142 Seca-Chr6 43910888 43912319 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Seca6g01142 PLATZ 3.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01142 - - atri:130803231 189.119