Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01135 ACACTACTCTTATGTAGCATCGAAAATCGTGCCAAGAATGAAAAAAACAAAAAAGCACGATCCGTTCCGTTACTAGTTGGTGACGTGTACACTGTTCAACTGGCTGAACCGGTTACGCCTGGCGTTGAAAAACATTGGGCTGCTTTACTTCATCCTCCATTGTCTTCTGTTCTGTTTTCCTCTTTCGCAGCTCAAAGCCCTATTGTCGTCATCGTTCAGGGTAAAACTTTTAATAGATACATCATCTTCGTCAACCAGGAGTCTTCTCCAAAAATGCTTCCTATGCGTCAGAAATCGCAGGTTGGAGGACTACAAACATCACTATCTCTAGTTTCTTCAGATCCTCACCTCTCTCCTGATGAACCTAGATCAAACTCTGACAATCTCCGTGAATCTCCAACTGAAAGTGCCAGTTCTCAAGAAACTTGGCCCACAGCTGATTTAAAGAAGATGGAGAATGGGAAAGCAGAGATTAATTGCCTTGAGCAGTCAGTTATTCATCGTGTTTCTAGTGCAGACAAAATAACTCTTCAGGACATCGCAAGAGAAAGTGTTGATATAATCTGTGAAAAAATGCATCGCCTTCCCGAGGAGTTTCTAGATGAGATGAAAAATGGTCTTCGAGTTATCCTTGAGGGTGGAAATGGTTCACAACATAGGGAGGAGTTTTTCATTTTGCAGAAGCTTGTGCAGAGTAGAACTGATTTAACACCCAAGACACTGATTAGAGCACATCGTGCGCAGCTTGAAATTCTTGTTGCAATCAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAGTCTATCACAGACTTCCCTGGTTGAAATCTTTGGGTATAAGAGATGCAGAAACATAGCATGCCAAAGCCAGCTTCCAGCTGATGATTGTACCTGTGAAATATGCACCAACAGTAATGGTTTCTGCAATCTTTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAAGTGAATACATGCCGCTGGATTGGATGTGATTTGTGCTCTCATTGGACTCACACAGATTGTGCCATCCGTGAGCAACTTATTTGCACGGGCCCTTCCATGAAGAGTGGAGCAGGATCAAGTGAAATGGTTTTTAGGTGTCAAGCATGCAATAGGACATCGGAACTGTTGGGTTGGGTTAAAGATGTCTTCCAGCACTGTGCGCCATCTTGGGAAGGAGAGGCCTTCATGAGGGAACTGGATTATGTAAGTAGGATCTTTCATGATAGTAAATACCCCCGAGGGAGGAAACTACTTTGGAAATGTGATGATCTCAAGGAAAAATTGAAAAGTAGAAAAATGGACTCAAAGGCTGCTTGCAGGGCAATATTGATGTTTTTCCAAGAGCTTGAGGTGGACTCTCCAAAGGGCCTGGAAAATGGAGAAAGTGGAAGGTTGATTGCACCACTGGATGCATGCAATAGAATTGCTGAAGTGGTGCAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGTTTGGCTCTTGATGCTTGTGATCGTGAACTAGCAGACAAAGCCAGGGAAGTGACAGAACTCAAGATGGAGAGGCAGAAAAAGAAGTTGCAGATAGAAGAACTGGAGAAAATTGTGAGGCTTAAAAATGCAGAGGCTGATATGTTCCAATTAAAGGCTAATGAGGCTAAACGAGAGGCTGAGAGGCTTCAGAGGATTGCACTTGCAAAGCAAGACAAATCAGAGGAAGAATTCACTAGCAATTACCTGAAACAACGATTAAGTGAGGCTGAGGCTGAGAAGCAATATCTGTACGAGAAGATCAAATTGCAGGAGAGTTCTCGTGTTTCACAGAGCAGTGGTGGTGGTGGTGACCCCTCTCAAATGCTGATGTATTCAAAAATTCATGATCTGCTATATAGTGTTCCTTCCAAGGCAGACAGCCAGCCTAATTTACGCCACCCGTTCCGGACAAATCCGTAA 1971 0.4328 TLLLCSIENRAKNEKNKKARSVPLLVGDVYTVQLAEPVTPGVEKHWAALLHPPLSSVLFSSFAAQSPIVVIVQGKTFNRYIIFVNQESSPKMLPMRQKSQVGGLQTSLSLVSSDPHLSPDEPRSNSDNLRESPTESASSQETWPTADLKKMENGKAEINCLEQSVIHRVSSADKITLQDIARESVDIICEKMHRLPEEFLDEMKNGLRVILEGGNGSQHREEFFILQKLVQSRTDLTPKTLIRAHRAQLEILVAINTGIQGFLHPSISLSQTSLVEIFGYKRCRNIACQSQLPADDCTCEICTNSNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICTGPSMKSGAGSSEMVFRCQACNRTSELLGWVKDVFQHCAPSWEGEAFMRELDYVSRIFHDSKYPRGRKLLWKCDDLKEKLKSRKMDSKAACRAILMFFQELEVDSPKGLENGESGRLIAPLDACNRIAEVVQEAIRKMEMVADEKMRMFKKARLALDACDRELADKAREVTELKMERQKKKLQIEELEKIVRLKNAEADMFQLKANEAKREAERLQRIALAKQDKSEEEFTSNYLKQRLSEAEAEKQYLYEKIKLQESSRVSQSSGGGGDPSQMLMYSKIHDLLYSVPSKADSQPNLRHPFRTNP. 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01135 656 Coils Coil 507 576 - -
Seca6g01135 656 Pfam PHD - plant homeodomain finger protein 283 406 IPR032881 -
Seca6g01135 656 MobiDBLite consensus disorder prediction 129 146 - -
Seca6g01135 656 CDD PHD_OBE1_like 313 372 IPR047578 -
Seca6g01135 656 PIRSF UCP025218 84 643 - -
Seca6g01135 656 MobiDBLite consensus disorder prediction 110 149 - -
Seca6g01135 656 Pfam Coiled-coil region of Oberon 501 635 IPR032535 -
Seca6g01135 656 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 393 412 IPR004082 -
Seca6g01135 656 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 536 556 IPR004082 -
Seca6g01135 656 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 191 213 IPR004082 -
Seca6g01135 656 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 233 248 IPR004082 -
Seca6g01135 656 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 248 263 IPR004082 -
Seca6g01135 656 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 274 295 IPR004082 -
Seca6g01135 656 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 575 597 IPR004082 -
Seca6g01135 656 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 320 340 IPR004082 -
Seca6g01135 656 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 109 637 IPR004082 -
Seca6g01135 656 SMART PHD_3 313 373 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01135 Seca-Chr6 43477079 43480805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01135 283 385 PHD Gene Family AT5G57380 32.075 1.05e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01135 - - gmx:100781890 1018.84