Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01115 ATGGATGAAGAGTTAGCTCTAGAGTTTATTGGTGACAAGAATTTGCGGGCTCACAAGGAATGTGAAGAAATGGTTTCTGAACCAGCTGAAGAGGATATAACCAGCAACCTGGAAAAGTCGGGAAAAAGATCTAGGACCTCAATGGAGGGGCAGAGCTTGAGTAGTTGCTGCTCAGAGGATGATGACTCTAATGCTTCTCAGCAGGAGCTAAATGGTGGAGGGTCTTCAAGCTTGAGCCTGAAGGATTCTGTAGCTTTGAAATTAAAGGGAAAATCAAGATCTAGTATAGGTTCTGCTATTGATCCACAGAGTGTCTATGCAAAAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCCTACAAAACCTGGTCCCCAATGGAACCAAGGTGGATATATGCACCATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGACGATCTCTGGATGTACGCTCCAATTGCTTACAATGGGATGAACATTGGACTAGACCTTAATATTACCCCAACCAAATAA 549 0.4171 MDEELALEFIGDKNLRAHKECEEMVSEPAEEDITSNLEKSGKRSRTSMEGQSLSSCCSEDDDSNASQQELNGGGSSSLSLKDSVALKLKGKSRSSIGSAIDPQSVYAKKRRERINERLRILQNLVPNGTKVDICTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNITPTK. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01115 182 SMART finulus 104 153 IPR011598 GO:0046983
Seca6g01115 182 MobiDBLite consensus disorder prediction 46 79 - -
Seca6g01115 182 Pfam Helix-loop-helix DNA-binding domain 108 148 IPR011598 GO:0046983
Seca6g01115 182 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 164 IPR036638 GO:0046983
Seca6g01115 182 FunFam Basic helix-loop-helix transcription factor 99 156 - -
Seca6g01115 182 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 171 - -
Seca6g01115 182 CDD bHLH_AtIND_like 101 161 - -
Seca6g01115 182 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 147 IPR011598 GO:0046983
Seca6g01115 182 Gene3D - 102 155 IPR036638 GO:0046983
Seca6g01115 182 MobiDBLite consensus disorder prediction 22 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01115 Seca-Chr6 42789774 42791214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01115 12 178 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 57.672 3.95e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca6g01115 HLH 3.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01115 - - gmx:100817334 241.891