Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01102 ATGGCCTCAAAGGACAAAATCATAATTGAGGGAATAGCACATGCAATTTCCTACCTGCACAGTGATTGCTCCCCACCAATTCTGCATAGAGATGTAACACTGAATAACATACTACTAGACTCAGACTTTGAACCACATATTGCATATTTTGGCACAACAAAGCTGCTAAGCTCCAACACTTTAACCTGGACATCAGTTGTTGGATCCTATGGCTACATGGCTCCAGAACATATTGAAGGTGCCATTGTTTATTTAGATGCTGAATCTACAGAGAGTTTCCAATTTATTTGGGCATATCCTGTACTTCTAGATCTCGGTGCACGGGCTAGCTATTTGCAGTTTGGAAAACATGTGTGA 357 0.409 MASKDKIIIEGIAHAISYLHSDCSPPILHRDVTLNNILLDSDFEPHIAYFGTTKLLSSNTLTWTSVVGSYGYMAPEHIEGAIVYLDAESTESFQFIWAYPVLLDLGARASYLQFGKHV. 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01102 118 Pfam Protein kinase domain 6 86 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01102 118 ProSiteProfiles Protein kinase domain profile. 1 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01102 118 PANTHER LEUCINE RICH REPEAT KINASE 2 7 81 - -
Seca6g01102 118 ProSitePatterns Tyrosine protein kinases specific active-site signature. 27 39 IPR008266 GO:0004672|GO:0006468
Seca6g01102 118 SUPERFAMILY Protein kinase-like (PK-like) 7 81 IPR011009 -
Seca6g01102 118 Gene3D Transferase(Phosphotransferase) domain 1 4 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01102 Seca-Chr6 42403475 42405027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01102 11 109 Receptor kinase-like Gene Family AT1G17750 45.545 3.67e-23 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca6g01102 Pkinase 4.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01102 - - gmx:100784185 126.716