Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01079 ATGTTAGTATACTACTTGGGATCTAGTAGCACACAAGTGTACAACTTGTTTTGGACTTACTTCAACTACTCTGGTTCGCTTCATGTCAGGATTTCTGAGTTAAGTGATGATGATATTAGATTGCTTGAGTTTGATTCTCTTCAGGATGCATATGATTTCTATAGTGAATATGCGAAATTTAAAGGATTTGTTGTTAGGAAAGATGATGTATATCGTGATCATAATAAGGATATTACAATGAGGCAATTGGTATGTAATAGGAAGGGGGAAAGGAGTGAGAAACATTTAAATAGGACAGATAAAATTAGGGAAGCTAAGGCCATTACTCGTACTAATTGTCTTGCGAGGATTCGATTGTATCTGGACAAAGATAGTAGCAAGTGGAGGGTTGGAATGTTTGAGCCAAATCACAATCATGAGCTAACTCCTGCAACTATGAAGGGTGGTCATTCAGACCTTGGATTTTGTAAGAAGGACCTGTACAATCACATTGGCAAGGAGAATAGGGCCAAAATAGAGGATGGGGATGCTTTTGCTGCCTTGTGCTATCTTCAAGCAAAGTATGATAGTAATCCTATGACATTTGTTAAGTTTACTACCACTGGAGATGATAGACTTGAAAATTTGTTCTGGGCTGATGTAGTTAGTAGAATTGATTATTTATGCTTTAGTGATGTAGTTTCTTTTGACACAACTTATAAAAAAAATAAGTATAACAGGCCTTTAGTAATTTTTTGTGGTTATAACCATCATGGTGAAACCACTATCTTTGGTTGTGCTCTTGTTGCGGATGAGAAGACAGAAACATATAAATGGGTGCTTGAAACTTTTCTGGAAGACATGTTCAATAAAGTACCTAAGGCAGTTGTTACTGATGGGAATGGTGCCATGCGTGAAGCTGTTAGGACTATTTTTCCATGTTCTCTTCACAGGCTATGTTCATGGCACCTTCAACAAAATGCTTGTATTAATTCATTCATTAAGAGATATGTTCAGAGTAAAAACAGTCTTGTTGATTTTCTTCACAATTTTGAGAGAGCTCTGAATGAATATAGGCATAATGAGTTAGCTTCTGATTACAAGTCTACATACACCCAACCTGTTTTGACAACTACATTGGAAAAGTATGAAGTACATGCTTGTAATGTCTATACCAGGAATAAATTTTTTTATGTAAGAAAGGAGATTGAGAAAGTTGCTGCCTTGAATGTGGTTGATAGGTCAGAGGTAGGTAATATTGTCACAATGAAGATGAATAAGTTTGGAGGTCCTAATTCCTTATATGTTGTGATTTATGATAAGTCTGTTGGTAAGTTGATTTGTGACTGTCGCCTATTTGAATCGTGTGGGTTACCATGCTCACATATTTTTTGTGCTATGAAACATGAGCAAATAGAATCAATCCCCTCGTCGTTGATTTGCAAAAGGTGGACAAAGTTTGCTAAAGTTGATCAGGTTTCTGCTATTTATAATGAAGATGGTGACACATCAAAAAAAGAAGTGTTGAGGTCTGGTGTTGTAGGTGCAGCTTGTAACAGGCTTAATAAGGCTATATATAAAAATCCTCATAATTTTGTGAAAAACATTGAGGCTATCCATCATTTGGCAGATCAAATGGAAAGGCAAGATGGTGTTGATCTGAATATTGCTGACATATCAAGGGTTGTTAACGATCCAACAATTGTCAAAACTAAAGGTGCACCTCGTAAGAGTAAGAAAATGATGAAGAAAAGGAAATGCTCTTATTGTAAGCGTCCAGGTCACACAATCAGGACATGCTCCAAATTCTCAACTCGAGATCAATTGCAAACCATTGAAGAAGAGGAATCTTCTGTTAAGAGTGATGGAGACTCACGTGATGAGTCAGTAAATGATAGGCACTGTTGCGATGGTACAAATGCTCATTTCACACAGATGCACAATGATCAAAGGTTCTCAGGAATGTATCAATATCGACCATCTATGATACAACATTTTGGTCAAGTTCAGTTTAATAGCAGAGTACATGTGATGCCCCAGTACCCTCATATACCCATCCAACATCCATTTCATAACTCCACAGGTGATCATGGAATGAATACATTAACAAGTCATTCACAGCATTTTACAACTGCACTGAACGAGGTCGAGAGCAAAGCTGGTCTGAGCAGGAAGTGTTTCAATCCAAGAGATAGCGGAATATAG 2184 0.3713 MLVYYLGSSSTQVYNLFWTYFNYSGSLHVRISELSDDDIRLLEFDSLQDAYDFYSEYAKFKGFVVRKDDVYRDHNKDITMRQLVCNRKGERSEKHLNRTDKIREAKAITRTNCLARIRLYLDKDSSKWRVGMFEPNHNHELTPATMKGGHSDLGFCKKDLYNHIGKENRAKIEDGDAFAALCYLQAKYDSNPMTFVKFTTTGDDRLENLFWADVVSRIDYLCFSDVVSFDTTYKKNKYNRPLVIFCGYNHHGETTIFGCALVADEKTETYKWVLETFLEDMFNKVPKAVVTDGNGAMREAVRTIFPCSLHRLCSWHLQQNACINSFIKRYVQSKNSLVDFLHNFERALNEYRHNELASDYKSTYTQPVLTTTLEKYEVHACNVYTRNKFFYVRKEIEKVAALNVVDRSEVGNIVTMKMNKFGGPNSLYVVIYDKSVGKLICDCRLFESCGLPCSHIFCAMKHEQIESIPSSLICKRWTKFAKVDQVSAIYNEDGDTSKKEVLRSGVVGAACNRLNKAIYKNPHNFVKNIEAIHHLADQMERQDGVDLNIADISRVVNDPTIVKTKGAPRKSKKMMKKRKCSYCKRPGHTIRTCSKFSTRDQLQTIEEEESSVKSDGDSRDESVNDRHCCDGTNAHFTQMHNDQRFSGMYQYRPSMIQHFGQVQFNSRVHVMPQYPHIPIQHPFHNSTGDHGMNTLTSHSQHFTTALNEVESKAGLSRKCFNPRDSGI. 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01079 727 MobiDBLite consensus disorder prediction 601 625 - -
Seca6g01079 727 MobiDBLite consensus disorder prediction 600 625 - -
Seca6g01079 727 Pfam FAR1 DNA-binding domain 52 142 IPR004330 -
Seca6g01079 727 SMART 26again6 439 466 IPR006564 GO:0008270
Seca6g01079 727 SUPERFAMILY Retrovirus zinc finger-like domains 566 597 IPR036875 GO:0003676|GO:0008270
Seca6g01079 727 Pfam MULE transposase domain 226 320 IPR018289 -
Seca6g01079 727 PANTHER OS01G0519700 PROTEIN 333 589 - -
Seca6g01079 727 ProSiteProfiles Zinc finger SWIM-type profile. 428 464 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01079 Seca-Chr6 41446175 41450906 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g01079 MULE 1.4e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01079 - - ahf:112717754 482.641