Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01058 ATGGCCTTAAGAGTTACTAGCCCTGCTTTTGAAGCTCCAATTCGTTTCCCTTTCCACATCTTACTCTGTCGCTTTCTTCAATTCTTTACTTTTAGGAATCAACAAATTCTAGCATGTCAGTCGATTATTGGAAAAAAGCAAATATATTATGATAAACATGATGGCGAGACACTCATATACAATGATAGCGATAAGGAATCGACAAAGTCTGACGACGTTAAACGTGACTTTAGTGTGGCTGAAGATCAAATTTTATGGATGGCATTTGAGGAACATGGCTTCCCTGAGGAAGTGTTGAATATAGTTTCAAAGTTTGTCGATGGTACCATTTTAGAAATTCAGGAGAGGTATAAATTTCTCAAGGAAAAGAATACGAGGAGTTTGGACCAACATTCTAAAGATTTTGAAGAACCTGAATCTCTTATTGGCATATCTTTGGATAAAAGCTTGAATGATGCTTTGGCTACTTTTGATAGCCTTTTCTGCCGGCAGTGCATTCAAATCTTTGATTGTCCTCTGCATGGTTGTTCACAACCTATATATCCTTGTGAAAAGCAGAAAGTATGGTCTGAACCTGAAGGTGACAGGAAACCATGTTGTGATAATTGTTACCTTCGGAAACCTCTGGAAGCGCAAGTTGATGGGAAGCTAAGTTTCTTAAATTGGAAACCTCTGGAAAAAGATTTATATCTGAAGGGAGTAGAAATATTTGGGAGGAACAGCTGCCTTATAGCACGAAACTTACTTTCTAGCTTGAAGACCTGCATGGAAGTAGCTAGCTACATGTATGCCGGAGAGGTGTCAGTACTTGATAGTTCAATCATGAACAAAAATGGACAAATTGATGCAGAGTGCGAATTTTGCAAATTTTCTACTAACGACTTTGATCAACCATTACTATTTTCCCAGGACCGAGAGATAGCATCAGGGTCACGGGAACTACTGTTGAGAAATGTGAAACTTACAAGCAGTATACGCCTTGTGGATGTCAGAAAATGTGTGGGAAGCAATGTCCTTGTCTTCATAATGGATCTTGTTGTGAAAAATATTGTGGGTGTTCAAAGCTATGCAAAAATCGGTTTAGAGGATGTTATTGTGCTACGAGTCAATGTAGAAGTCAACAGTGTCCATGCTTTACAACAGAACGAGAATGTGACCCAGATTTGTGGCGGTGGTTCATTAGGAGAACCACCTCGCCATGGAGATGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAAAACCAAAGGATTCTATTAGCAAAGTCTGATGTTGAAGGATGGGGAGTCTTCTTAAAGAACCCAGCTAACAAAAATGATTACTTGGGAGAGCTCACGGGTGAACTGATCTCTCATTTAGAAGCAGAAAAGCGTCGGAAAATGTATGATCGTGCAAACTCCTCTTTCCTTTTTAACTTGAATGATCAGGCAAGTGTCTCTATAATGTACGTTGTTGATGCTTATCGCAAGGGAGACAAGCTGAAATTTGCTAACCACGCAGAAAAGCCCAACTGTTATGCAAGGATTATGCTTGTTGGAGGGGATCATCGAGTAGGGATATTTGCCAAGGAACGCATTGAAGCTGGTGAGGAGCTTTTCTGTGATTATTGCAACAGTCCAGAGCAAGCACCACCATGGTTTTAA 1644 0.4002 MALRVTSPAFEAPIRFPFHILLCRFLQFFTFRNQQILACQSIIGKKQIYYDKHDGETLIYNDSDKESTKSDDVKRDFSVAEDQILWMAFEEHGFPEEVLNIVSKFVDGTILEIQERYKFLKEKNTRSLDQHSKDFEEPESLIGISLDKSLNDALATFDSLFCRQCIQIFDCPLHGCSQPIYPCEKQKVWSEPEGDRKPCCDNCYLRKPLEAQVDGKLSFLNWKPLEKDLYLKGVEIFGRNSCLIARNLLSSLKTCMEVASYMYAGEVSVLDSSIMNKNGQIDAECEFCKFSTNDFDQPLLFSQDREIASGSRELLLRNVKLTSSIRLVDVRKCVGSNVLVFIMDLVVKNIVGVQSYAKIGLEDVIVLRVNVEVNSVHALQQNENVTQICGGGSLGEPPRHGDGQCGNMRLLLRQNQRILLAKSDVEGWGVFLKNPANKNDYLGELTGELISHLEAEKRRKMYDRANSSFLFNLNDQASVSIMYVVDAYRKGDKLKFANHAEKPNCYARIMLVGGDHRVGIFAKERIEAGEELFCDYCNSPEQAPPWF. 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01058 547 CDD SET_EZH 416 537 - -
Seca6g01058 547 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 221 269 IPR045318 GO:0006338|GO:0042054
Seca6g01058 547 ProSiteProfiles SET domain profile. 416 537 IPR001214 GO:0005515
Seca6g01058 547 Gene3D SET domain 369 537 IPR046341 -
Seca6g01058 547 SMART set_7 416 543 IPR001214 GO:0005515
Seca6g01058 547 Pfam SET domain 427 536 IPR001214 GO:0005515
Seca6g01058 547 SUPERFAMILY SET domain 402 539 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01058 Seca-Chr6 40422354 40427286 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01058 405 540 C2H2 Transcription Factor Family AT2G23740 26.531 4.05e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca6g01058 SET 9.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01058 - - cam:101494145 250.751