Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01053 ATGCTAGCTTGTCAGTCGATTATTGGAAAAAAGCAAATATATTATGATAAACATGATGGCGAGACACTCATATACAAAGATAGCGATAAGGAATCGACAAAGTCTGACGACGTTAAACGTGACTTTAGTGTGGCTGAAGATCAAATTTTATGGTGTTCAAAGTTATGCAAAAATCGGTTTAGAGGATGTTATTGTGCTATGAGTCAATGTAGAAGTCAACAGTGTCCATGCTTTGCAGCAGAACGAGAATGTGATCCAGATGTATGTCGAAATTGCTGGGTTGGTTGTGGTGGTGGTTCATTAGGAGAGTCACCTCGCCATGGAGATGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAAAACCAAAGGATTCTATTAGCAAAGTCTGATGTTAAAGGATGGGGAGCCTTCTTAAAGAATCCAGCTAACAAAAATAATTACTTGGGAGAGCTCACGGGTGAATTGATCTCTCATTTAGAAGCAGAAAAGCGTCGGAAAATGTATGATCGTGCAAACTCCTCTTTCCTTTTTAACTTGAATGATCAGGAAAGTGTCTCTATAATGTACGTTCTTGATGCTTATCGCAAGGGAGACAAGCTGAAATTTGCTAACCACTCAGAAAAACCCAACTGTTATGCAAGGATTATGCTTGTTGGAGGGGATCATCGAGTAGGGATATTTGCCAAGGAATGCATTGAAGCTGGTGAGGAGCTTTTCTATGATTATTGCTACAGTCCAGAGCAAGCACCACCATGGTTTTAA 765 0.4 MLACQSIIGKKQIYYDKHDGETLIYKDSDKESTKSDDVKRDFSVAEDQILWCSKLCKNRFRGCYCAMSQCRSQQCPCFAAERECDPDVCRNCWVGCGGGSLGESPRHGDGQCGNMRLLLRQNQRILLAKSDVKGWGAFLKNPANKNNYLGELTGELISHLEAEKRRKMYDRANSSFLFNLNDQESVSIMYVLDAYRKGDKLKFANHSEKPNCYARIMLVGGDHRVGIFAKECIEAGEELFYDYCYSPEQAPPWF. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01053 254 SMART CXC_2 58 95 IPR033467 -
Seca6g01053 254 SMART set_7 123 250 IPR001214 GO:0005515
Seca6g01053 254 CDD SET_EZH 123 245 - -
Seca6g01053 254 ProSiteProfiles CXC domain profile. 4 109 IPR026489 -
Seca6g01053 254 Pfam SET domain 164 243 IPR001214 GO:0005515
Seca6g01053 254 SUPERFAMILY SET domain 49 247 IPR046341 -
Seca6g01053 254 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 52 248 IPR045318 GO:0006338|GO:0042054
Seca6g01053 254 FunFam Putative histone-lysine N-methyltransferase EZH2 27 246 - -
Seca6g01053 254 Gene3D SET domain 27 246 IPR046341 -
Seca6g01053 254 ProSiteProfiles SET domain profile. 123 244 IPR001214 GO:0005515
Seca6g01053 254 Pfam CXC domain 62 93 IPR041355 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01053 Seca-Chr6 40282699 40284512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01053 112 247 C2H2 Transcription Factor Family AT2G23740 27.891 8.03e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca6g01053 SET 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01053 - - pavi:110749358 346.28