Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01051 ATGAGTCAATGTAGAAGTCAACAGTGTCCATGCTTTGCAACAGAACGAGAATGTGACCCAGATGTATGTCGAAATTGTTGGGTTAGTTGTGGCGGTGGTTCATTAGGAGAGCCACCTCGCCATGGAGATGGTCAATGTGGAAATATGAGGCTTCTTTTAAGTCAAAACCAAAGGATTCTATTAGCAAAGTCTAATGTTGAAGGATGGGGAGCCTTCTTAAAGAACCCAGCTAACAAAAATGATTACTTGGGAGAGCTCACGGGTGAACTGATCTCTCATTTAGAAGCAGAAAAGCATCGGAAAATGTATGATCGTGCAAACTCCTCTTTCCTTTTTAACTTGAATGATCAGTACATTCTTGATGCTTATCACAAGGGAGACAAGCTGAAATTTGCTAACCACTCAGAAAAACCCAATTGTTATGCAAGGATTATGCTTGTTGGAGGGGATCATCGAGTAGGGATATTTGCCAAGGAACACATTGAATCTTGTGAGGTGCTTTTCTATGATTATTGCTACAGTCCAGAGCAAACACCACCATGGTTTTAA 549 0.4098 MSQCRSQQCPCFATERECDPDVCRNCWVSCGGGSLGEPPRHGDGQCGNMRLLLSQNQRILLAKSNVEGWGAFLKNPANKNDYLGELTGELISHLEAEKHRKMYDRANSSFLFNLNDQYILDAYHKGDKLKFANHSEKPNCYARIMLVGGDHRVGIFAKEHIESCEVLFYDYCYSPEQTPPWF. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01051 182 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 2 175 IPR045318 GO:0006338|GO:0042054
Seca6g01051 182 Pfam SET domain 81 171 IPR001214 GO:0005515
Seca6g01051 182 Gene3D SET domain 1 174 IPR046341 -
Seca6g01051 182 SUPERFAMILY SET domain 6 175 IPR046341 -
Seca6g01051 182 CDD SET_EZH 57 173 - -
Seca6g01051 182 ProSiteProfiles SET domain profile. 57 172 IPR001214 GO:0005515
Seca6g01051 182 SMART set_7 57 178 IPR001214 GO:0005515
Seca6g01051 182 Pfam CXC domain 2 27 IPR041355 -
Seca6g01051 182 ProSiteProfiles CXC domain profile. 1 43 IPR026489 -
Seca6g01051 182 SMART CXC_2 2 29 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01051 Seca-Chr6 40238535 40239712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01051 46 175 C2H2 Transcription Factor Family AT2G23740 24.490 8.96e-07 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca6g01051 SET 4.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01051 - K11430 pper:18768715 327.791