Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01045 ATGTATAGGAATCTTTTAATTAATAATATCCATTTCCAACAGGTGAGTGTTCCATGCAGTAGCCTATTTGACATGGTGACTGTTCGATGTGGGCACTGCACAAATCTATGGTCCGTGAACATGGCCGCAGCGTTTCAGTCACTGTCATGGCAAGATCTTCAGGCATCAGGGTACTACTCCAAACCAGAGTATAGGATTGACACAGGTTCAACTTCTAAATCCAACAAGATTCAAATGCGTCCACCCACTTCGCATGTAACTCAGCAAAGGGTGGTGAACCGGCCTCCCGAGAAGAGGCAGCGTGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATTCAAAGGATAAAGGCCAATAATCCTGAAATCAGTCACAGGGAAGCATTCAGTACGGCTGCCAAGAACTGGGCACATTTCCCTCATATTCATTTTGGGCTGATGTTGGAAAGCAACAATCAAGCTAAGATGGAGAATGGCACTGAGAAGCAATTGATGTCAAGGGCTGCGCTGTTGAACAAATGA 525 0.4457 MYRNLLINNIHFQQVSVPCSSLFDMVTVRCGHCTNLWSVNMAAAFQSLSWQDLQASGYYSKPEYRIDTGSTSKSNKIQMRPPTSHVTQQRVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMENGTEKQLMSRAALLNK. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01045 174 CDD HMG-box_SF 101 137 - -
Seca6g01045 174 Pfam YABBY protein 14 147 IPR006780 GO:0007275
Seca6g01045 174 SUPERFAMILY HMG-box 90 140 IPR036910 -
Seca6g01045 174 Gene3D High mobility group box domain 84 164 IPR036910 -
Seca6g01045 174 PANTHER PROTEIN YABBY 6-RELATED 14 157 IPR006780 GO:0007275
Seca6g01045 174 FunFam axial regulator YABBY 5-like 85 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01045 Seca-Chr6 39680747 39685854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01045 15 157 C2C2-YABBY Transcription Factor Family AT2G26580 77.778 7.65e-77 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca6g01045 YABBY 1e-57 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01045 K25796 - gmx:100804731 287.345