Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01042 ATGGTATCAGAGCTCCATCCATGGAGCTCACCTCGCTTCAAGAAATTTCGACGCAGTCCTAAGAAGAGTTTTCTGAATGTTCTAAATATGGAGGTTGTTGCAAAGGTATCATCATCATCGCCATCTTCCATGAATTCCCATGTATCTGCGCATTTTATTCCTCCTTCTTCTGTTTCATTTTCGGCCAACACATATTCTTCTCCCACTATGGAAATTGGTTCTTCCCCGGCTTTGTTTTTCTTGCATCAAATCGGTGAAGATTCCACCAAAAAACTAGAGTGTAAATCATCTTCAGATCCTTTCATTTTTGACGATTTTGGATTCAAATCAATGAAAATTCTAGAAGGTTTAGTGATGGATTCATCGAACAGCGGTAGCAGGGGAAAGATTTCTCTGCAGAATATGAGCGTGGAGCAATTGAAGCTGCTTGTAGAAGCTCTGAAGGCTGACGACGCCGAGGAGATATTTGTGCCGCCACTGAATTTTGCGATGGTCGACATTAGCATTTTTATGTTTGTCTTTCCATATGCTGCTAACTTCAGATTCTTGAAATCCATTCCTCTCCATTCCATTATATGTTTGTGCCCTGAACCGTATCCAAAAACGACTGTGGAGTATTTGAAGGTCAACGGAATAAGGCTTTATCAATTTGGGATCGACGACTGTAAGGAACCCTTTGTCAATATCCCATACAATACAATTTGTGAAGCTTTGAAAGTGGCTCTTAATGTTAGGAATCACCCTCTGCTGATTCTTTGTAAAAGAGGGAAGCATCGCACTGGTGGTCTTGTGAGGGATCCTCAGAATATGTTTGATGAAATGCTAGAGATGCATGTACAACAGCTGTTTGTTGCAATGATTGTAAGGGATGTCCAACGGCTGTTTGATGCAATGCCTGATAAGGATGCAGAGGAACTGTTTGCTTTAATGCCTGAGAGAGATGCAAGAATGGACCACCCCCGCAGTGTTTTCATTATACATGTCTCAACACATGCACATGGAAGTGTTCCCTATTGCGGCCTTGGTGAACTAATTCTTCCTGAAAACGAACCAGGAAGCAATATTATGCCTTGGTGTTTCCATATTGATGTTTCCAAGTTCATGGGTACAACCAAGGTTCCAAAACCGCAAAGCCTTGGTGGAGTTGAGCTCTTGCAGACAGGGTCAGACGTTGCAACTAAAATAACTGGGGCTGGGAGTGGTGCAGACACTCCTCTTGATAACTTGGTGACAAAAACGGAGATGAAGGGTCCTGAGATGTATATCTCGGAAGAGATTAGTGCAGAGTTCAGGGAATCATTGCTTGTAAGGGTTGGATTAATGGGTGTTTTTTACCTCAGAACTTTGCCACCTAAAACTGCTAGTGATAAGGAAACTGAATTCTCTTTCCGAGTTGAGGGAACTAGTGTTGTTAAGAGATTTTCTATACAGAGTTTTCGTGTTAGTAGCCTTGGTAATGGGATGTTTCACGTGAGGACTACAACCTCAGAGGAGCCTATATCGATTATGAAATTTAGTTTGCTACCCAGGTTGATGCCTTTGCCTTTGAAAGCTAGACTAATAAAACGACATACTGGCATAAAGAGGGTACTGGTAAGTGGACTGTTCAGCAAGCTGCTGAATTATCAGTTGCTGCTCCCAGAATTAAAGCTACTTTGGATGCTAGGTTCCTTAGTGGGCATGTTGGGACTGCATCCTATGGTGTTAGATGAGGTGATGGATTGTTTTCTTGGTTTCAAGTTGGTATTAGTTGATACCAAATACCAACTTGCGGGAGGGTATTGGGAATATAAGTTCTATTAG 1803 0.4204 MVSELHPWSSPRFKKFRRSPKKSFLNVLNMEVVAKVSSSSPSSMNSHVSAHFIPPSSVSFSANTYSSPTMEIGSSPALFFLHQIGEDSTKKLECKSSSDPFIFDDFGFKSMKILEGLVMDSSNSGSRGKISLQNMSVEQLKLLVEALKADDAEEIFVPPLNFAMVDISIFMFVFPYAANFRFLKSIPLHSIICLCPEPYPKTTVEYLKVNGIRLYQFGIDDCKEPFVNIPYNTICEALKVALNVRNHPLLILCKRGKHRTGGLVRDPQNMFDEMLEMHVQQLFVAMIVRDVQRLFDAMPDKDAEELFALMPERDARMDHPRSVFIIHVSTHAHGSVPYCGLGELILPENEPGSNIMPWCFHIDVSKFMGTTKVPKPQSLGGVELLQTGSDVATKITGAGSGADTPLDNLVTKTEMKGPEMYISEEISAEFRESLLVRVGLMGVFYLRTLPPKTASDKETEFSFRVEGTSVVKRFSIQSFRVSSLGNGMFHVRTTTSEEPISIMKFSLLPRLMPLPLKARLIKRHTGIKRVLVSGLFSKLLNYQLLLPELKLLWMLGSLVGMLGLHPMVLDEVMDCFLGFKLVLVDTKYQLAGGYWEYKFY. 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01042 600 Gene3D Protein tyrosine phosphatase superfamily 155 266 IPR029021 -
Seca6g01042 600 Pfam Tyrosine phosphatase family 157 264 IPR004861 -
Seca6g01042 600 PRINTS Plant and fungal dual specificity phosphatase signature 212 226 IPR020428 GO:0016791
Seca6g01042 600 PRINTS Plant and fungal dual specificity phosphatase signature 229 243 IPR020428 GO:0016791
Seca6g01042 600 PRINTS Plant and fungal dual specificity phosphatase signature 193 206 IPR020428 GO:0016791
Seca6g01042 600 PRINTS Plant and fungal dual specificity phosphatase signature 156 173 IPR020428 GO:0016791
Seca6g01042 600 PANTHER OS08G0243900 PROTEIN 359 528 - -
Seca6g01042 600 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 156 264 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01042 Seca-Chr6 39471595 39473456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01042 154 273 Protein tyrosine phosphatase (PTP) family AT4G03960 57.812 8.54e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01042 - - aip:110267346 258.455