Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca6g01034 | ATGGGAAAATTGACCAGAACAGGAACGCTGCTGCATGGTGTTCTTCATGTTACAATTTTTGAAGTAGATAAGTTTTACGGTTTGGATTGTTGCAACTGTTTCCCGAAGCTAATTGAAGAAACTGCTCCAATTGGGAAAGGTGCAGCTGGACTATATGCAACCATTGAATTACACAATGCAAAAGTAGGCAGAACTAGAGTTATAAAGAATGAACATTCTCATCTTCAGTGGAATGAATCTTTCCAAATTTATACTGCTCACATTGCAACTGATGTTGTGTTTTCTATTAAAAAACATGATCCAATTGGGGCAGAGGTGATTGGAAGAGCTTATTTGCCCATTGAAGATGTAGTAAATGGACAAAATCTTGATACATGGCTTCAGATCTTGAATAAGAAAAATAAATCTCTCCATGGAGGTCCAAGAATTCATGTGAAGTTACAGTTTTATGATGTCACTCAGGAAACCAATTGGTCTCAAGGGATTAAAAGTCCTGAGTTTCAAGGAGTCCCATACACATACTTCCCTCAAAGAAGTGGTTGTAGGGTCACACTTTACCAAGATGCTCATATTCATGACAAATTTTTTCCTAAAATTCCCCTCACTGGTGGAAAGTATTATGAGCCACAAAGATGTTGGGAAGATGTTTTTGAAGCTATTTACAAGGCAAAGCACTTGATATACATAGCAGGGTGGTCTATTTACACCAAAATTACCTTGGTTAAGGAGTGGAGTGGGAAAAAACCAGGAGCAGATTTGACACTTGGGGAGCTTCTTAAAATGAAGGCTAGTGATGGAGTCACAGTGTTGATACTTGTATGGGATGACAAAACTTGA | 837 | 0.3823 | MGKLTRTGTLLHGVLHVTIFEVDKFYGLDCCNCFPKLIEETAPIGKGAAGLYATIELHNAKVGRTRVIKNEHSHLQWNESFQIYTAHIATDVVFSIKKHDPIGAEVIGRAYLPIEDVVNGQNLDTWLQILNKKNKSLHGGPRIHVKLQFYDVTQETNWSQGIKSPEFQGVPYTYFPQRSGCRVTLYQDAHIHDKFFPKIPLTGGKYYEPQRCWEDVFEAIYKAKHLIYIAGWSIYTKITLVKEWSGKKPGADLTLGELLKMKASDGVTVLILVWDDKT. | 279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca6g01034 | 278 | CDD | C2_plant_PLD | 10 | 150 | - | - | |
| Seca6g01034 | 278 | SMART | C2_3c | 14 | 126 | IPR000008 | - | |
| Seca6g01034 | 278 | Gene3D | C2 domain | 11 | 163 | IPR035892 | - | |
| Seca6g01034 | 278 | ProSiteProfiles | C2 domain profile. | 1 | 127 | IPR000008 | - | |
| Seca6g01034 | 278 | Pfam | C2 domain | 46 | 128 | IPR000008 | - | |
| Seca6g01034 | 278 | PANTHER | PHOSPHOLIPASE D | 9 | 278 | IPR015679 | - | |
| Seca6g01034 | 278 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 10 | 152 | IPR035892 | - | |
| Seca6g01034 | 278 | SUPERFAMILY | Phospholipase D/nuclease | 154 | 275 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca6g01034 | Seca-Chr6 | 38431703 | 38433161 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca6g01034 | 10 | 278 | Phospholipase D Gene Family (Wang group) | AT3G15730 | 57.509 | 1.39e-112 | 341 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca6g01034 | K01115 | - | jre:108995583 | 378.637 |