Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01015 ATGGAACCATCAAAACAATGGGCAACAGATGCTCTGAATATATGGCAGCATGTGGTGAAAAAGAGTGGGTGGAAAGATCTGGAGCAATCAGGTGGCATAGAAGACGGAGATCGACAGCAAAAGGCATTTGATGATGCAGATTACTCATCCTCAGCGATTGAAGGCAAAAGCAACTCAAAGAAGAGGAGGGATATTGAGGATGAGGATGAGGATGGAGAGGACAGGGAGGATATTACCTCGTTAAAGAAGCCGCGGGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTCATGGCTGCTGTGAATCAACTAGGAATTGATATCTTATCTAGAATTGCAATATTTGGGATAACCCCATCTAGACTTTCCAGATTGTACTCAAATAGCCAAATCAGTTTTCCAAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTCCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGCAGAGCAACTTTAATAACTCATTCATCAACTCACAAGATTCAACATTTGGGGCTACTTCAATAAATGGAATAGATCTGCAAACTCTTCCAGTTGTTGGCCAACTCCAAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTCGGCAGATCAATTGCAAAAGCAGGTATTCCCATGCCTCTAGTTGAGCAAAAGAACCTTTTCACTTTTGAGAACTCAAAATTAAGAGCAGCAGCTTGCAATTGGTGGAATCAAGTGAGCATGTGTCTGTCAGGGTATGAAATTAAGCAAGGAAATCAAGGTGGCAACACCTTGGAGAAAACTGATGCAACTGGTGAAAATGTAAACGGGGAAGATGCTATTGATGTTGATGACAATGATGAAACTATTGATTGGATTTTGAAGCAGTAA 888 0.42 MEPSKQWATDALNIWQHVVKKSGWKDLEQSGGIEDGDRQQKAFDDADYSSSAIEGKSNSKKRRDIEDEDEDGEDREDITSLKKPRVVWSVELHQQFMAAVNQLGIDILSRIAIFGITPSRLSRLYSNSQISFPKAVPKKILELMNVPGLTRENVASHLQQSNFNNSFINSQDSTFGATSINGIDLQTLPVVGQLQAQSLAKLQAAGLGRSIAKAGIPMPLVEQKNLFTFENSKLRAAACNWWNQVSMCLSGYEIKQGNQGGNTLEKTDATGENVNGEDAIDVDDNDETIDWILKQ. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01015 295 SUPERFAMILY Homeodomain-like 81 160 IPR009057 -
Seca6g01015 295 MobiDBLite consensus disorder prediction 27 78 - -
Seca6g01015 295 NCBIfam myb-like DNA-binding domain, SHAQKYF class 134 160 IPR006447 GO:0003677
Seca6g01015 295 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 42 227 IPR044841 GO:0003700|GO:0006355
Seca6g01015 295 MobiDBLite consensus disorder prediction 27 44 - -
Seca6g01015 295 Gene3D - 79 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01015 Seca-Chr6 37308561 37310190 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01015 13 235 Response Regulator Gene Family AT3G16857 48.855 4.94e-62 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca6g01015 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01015 - K14491 fve:101292682 241.121