Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01001 ATGAGGGTTATTAAAGATGTGGCTTCTACGGTCTTAAACTTGCATGAAGGGTGGGAAGCCAAGGTAGTGCATAGGGACATTAAGGCTAGCAATGTGTTGTTGGATAAGGATATGAATGGAAGGCTTGGAGATTTTAGGTTAGCCAGAATGCACAACCATGGTCAAATTTCTAGCACCACTAAATTGGTTGGAACAGTTGGGTACATGGCTCCTGAAGTGATTAGGACTGGATGA 234 0.4316 MRVIKDVASTVLNLHEGWEAKVVHRDIKASNVLLDKDMNGRLGDFRLARMHNHGQISSTTKLVGTVGYMAPEVIRTG. 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01001 77 ProSiteProfiles Protein kinase domain profile. 1 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01001 77 Gene3D Transferase(Phosphotransferase) domain 1 1 77 - -
Seca6g01001 77 Pfam Protein kinase domain 4 75 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01001 77 ProSitePatterns Serine/Threonine protein kinases active-site signature. 22 34 IPR008271 GO:0004672|GO:0006468
Seca6g01001 77 SUPERFAMILY Protein kinase-like (PK-like) 2 77 IPR011009 -
Seca6g01001 77 PANTHER - 2 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01001 Seca-Chr6 36922934 36923167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01001 1 77 Receptor kinase-like Gene Family AT4G04960 66.234 5.43e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca6g01001 Pkinase 9e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01001 - - gsj:114386544 139.428