Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01000 ATGAGGGTTATTAAAGATGTGGCTTCTGCGGTCTTATACTTGCATGAAGAGTGGGAAGCCAAAGTAGTGCATAGGGACATTAAGGCTAGCAATGTGTTGTTGGATAAGTATATGAATGGAAGGCTTGGAGATTTTGGGTTAGCCAGAATGCACAACCATGGTCAAATTTCTAGCACCACAAAATTGGTTGGAACAGTTTGGTACATGGCTCCTGAAGTGATTAGGATTGGATGA 234 0.4188 MRVIKDVASAVLYLHEEWEAKVVHRDIKASNVLLDKYMNGRLGDFGLARMHNHGQISSTTKLVGTVWYMAPEVIRIG. 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01000 77 PANTHER - 2 74 - -
Seca6g01000 77 ProSiteProfiles Protein kinase domain profile. 1 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01000 77 ProSitePatterns Serine/Threonine protein kinases active-site signature. 22 34 IPR008271 GO:0004672|GO:0006468
Seca6g01000 77 Pfam Protein kinase domain 3 75 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01000 77 SUPERFAMILY Protein kinase-like (PK-like) 2 77 IPR011009 -
Seca6g01000 77 Gene3D Transferase(Phosphotransferase) domain 1 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01000 Seca-Chr6 36653725 36653958 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01000 1 77 Receptor kinase-like Gene Family AT5G59270 63.636 3.08e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca6g01000 Pkinase 1.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01000 - - gsj:114386544 135.576