Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00977 ATGGCCACACTCACCACTCTCTCCAGGGATGAATCCTCCGACTACGACAGCAGTTCCTCCTCCATAACCGTTCCAGACTCTAGCCGCCGCACCAGTTGGCTGAGCAACCTCAGTTTCAGCAGTCGCCGCCGCAGCAGCAGCTCAGTCTCCCTCTCTTCCTCCATCACCACTACCACCACAGACACCACCTCCCATACCAAGCCACACAAGGCCAACCACACTGCATGGGAGGCCATGCGGCTTCTCCGCCGCGACAACAACGGAAGCATCCGCCTCGACCACTTCCGCCTTCTGCGGCGGCTCGGCGGCGGAGACATTGGGAACGTCTATCTCTGTCAAGTAAGAAACCCTGTGGTTGGTTTGCCGCAGTGCTCGTACGCAATGAAAGTGGTTGACAGAGAAGCACTTGCTGTGAGGAAGAAACTGCAGAGGGCAGAGATGGAGAAGGAGATTTTGGGAATGATTGATCATCCTTTTTTGCCTACTTTATATGCTGAGTTTGATGCTTCTCATTATTCTTGCTTGGTCATGGAGTTTTGCCCTGGTGGTGACTTGTATGCTGCTCGCCAACGCCAGCCACAGAAGCGCTTTACCATCACTTCCGCTAAGTTTTATGCAGCTGAGACACTTGTGGCGCTGGAGTATCTGCACATGATGGGGATAGTGTACAGAGATTTGAAGCCAGAGAATGTGTTGGTAAGGGAAGATGGGCACATTATGCTTTCAGATTTTGATCTCTGTCTTAAATGTGACGTTGTTCCAAAGCTGTTAAGAAGTAAAACCAGATTGGAACGCAGTTTCAAGAGCACAAAGAGGTCAACAACACCTTCTTGTGCTGCCCCAATGCAGCCTGTTCTGTCATGTTTCTCTGCATCAAGCAATAAGAGAAAGAAAGCAGCAACAGTGACAACAGTTATAAGGGAGAATGTTGAAGTGTATGAAGTTGATCCTGAGATAGTGGCAGAGCCCATCAATGCCCGTTCTAAATCATTTGTAGGAACACATGAGTACTTGGCACCAGAGGTGATTTCAGGGCAAGGCCATGGGAGTGCAGTGGATTGGTGGACATTTGGGGTGTTCTTGTATGAAATGTTATATGGCAAAACACCTTTCATAGGTGAAAACAATGAGAAAACACTCATGAACATACTCAAGCAGCCATTGGTTTTTCCTAAAATTGCAGTTAACAACAGCAAGGAGTTTGAAGAGATGGTTAAGGTTCAAGACCTCATTAGCAAGCTGTTGGTGAAGAATCCCAAGAAGAGAATTGGAAGCTGCATGGGATCGGTTGAGATCAAGAGGCATGAGTTCTTCAAGGGTGTGAATTGGGCTCTAATTAGATCAGTTAGGCCACCTGAGGTTCCTGCTGAAATGAACAAGATTAGGAGTAGTAGGGTGTTGTTACCCAAACTAAGCAAGAAAGACAAGGATCAACCTTATCAGATTAGTCATAATTTTGACTACTTTTAA 1470 0.4721 MATLTTLSRDESSDYDSSSSSITVPDSSRRTSWLSNLSFSSRRRSSSSVSLSSSITTTTTDTTSHTKPHKANHTAWEAMRLLRRDNNGSIRLDHFRLLRRLGGGDIGNVYLCQVRNPVVGLPQCSYAMKVVDREALAVRKKLQRAEMEKEILGMIDHPFLPTLYAEFDASHYSCLVMEFCPGGDLYAARQRQPQKRFTITSAKFYAAETLVALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLLRSKTRLERSFKSTKRSTTPSCAAPMQPVLSCFSASSNKRKKAATVTTVIRENVEVYEVDPEIVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTFGVFLYEMLYGKTPFIGENNEKTLMNILKQPLVFPKIAVNNSKEFEEMVKVQDLISKLLVKNPKKRIGSCMGSVEIKRHEFFKGVNWALIRSVRPPEVPAEMNKIRSSRVLLPKLSKKDKDQPYQISHNFDYF. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00977 489 Coils Coil 128 148 - -
Seca6g00977 489 MobiDBLite consensus disorder prediction 1 28 - -
Seca6g00977 489 FunFam protein kinase PINOID 180 248 - -
Seca6g00977 489 Gene3D Transferase(Phosphotransferase) domain 1 326 456 - -
Seca6g00977 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Seca6g00977 489 SMART serkin_6 95 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00977 489 Gene3D Transferase(Phosphotransferase) domain 1 180 249 - -
Seca6g00977 489 ProSiteProfiles Protein kinase domain profile. 95 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00977 489 Pfam Protein kinase domain 328 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00977 489 Pfam Protein kinase domain 96 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00977 489 CDD STKc_phototropin_like 93 456 - -
Seca6g00977 489 FunFam serine/threonine-protein kinase D6PK-like 326 456 - -
Seca6g00977 489 Gene3D Phosphorylase Kinase; domain 1 93 179 - -
Seca6g00977 489 MobiDBLite consensus disorder prediction 49 65 - -
Seca6g00977 489 PANTHER FLIPPASE KINASE 1-RELATED 17 459 - -
Seca6g00977 489 SUPERFAMILY Protein kinase-like (PK-like) 78 458 IPR011009 -
Seca6g00977 489 FunFam protein kinase PINOID 2 93 179 - -
Seca6g00977 489 MobiDBLite consensus disorder prediction 49 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00977 Seca-Chr6 34951228 34953651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00977 1 489 AGC Kinase Gene Family AT2G26700 58.550 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca6g00977 Pkinase 7.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00977 K08286 - gmx:100777988 723.005